Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0308 ATGGACTTCCAACCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACGGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGCCAATATGCCTTGGGAGATGAAGCTGATGTGTTTTTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAGAAGTTACCAGAATTCCAAGCCTCGTCACCAGGAAGGCAGCCTGACGCCCTTCATTAG 681 44.2 MDFQPHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPRKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPGRQPDALH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2855259 2857948 + CrPI670011_05g003080.1 Cre05g0308 496821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0308 226 SUPERFAMILY GST C-terminal domain-like 100 224 IPR036282 -
Cre05g0308 226 NCBIfam maleylacetoacetate isomerase 22 224 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Cre05g0308 226 Gene3D Glutaredoxin 22 98 - -
Cre05g0308 226 SFLD Main (cytGST) 20 207 - -
Cre05g0308 226 SUPERFAMILY Thioredoxin-like 18 102 IPR036249 -
Cre05g0308 226 Pfam Glutathione S-transferase, N-terminal domain 22 97 IPR004045 -
Cre05g0308 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 18 99 IPR004045 -
Cre05g0308 226 SFLD Glutathione Transferase (cytosolic) 20 207 IPR040079 -
Cre05g0308 226 FunFam Maleylacetoacetate isomerase 103 226 - -
Cre05g0308 226 PANTHER MALEYLACETOACETATE ISOMERASE 18 224 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Cre05g0308 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 104 225 IPR010987 -
Cre05g0308 226 CDD GST_N_Zeta 21 92 IPR034333 -
Cre05g0308 226 FunFam Glutathione S-transferase Z1 18 102 - -
Cre05g0308 226 Gene3D - 101 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0378 Cre-Chr2:957004 Cre05g0308 Cre-Chr5:2855259 4.90E-69 dispersed
Cre05g0308 Cre-Chr5:2855259 Cre05g0461 Cre-Chr5:4180869 1.50E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0308 K01800 - csv:101213403 378.637