Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0324 ATGCCCTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTGGACCCGGTTCGGTTGGCCCAGACCGGGGTTGCGGAAGCCAGAACCGAAATGGGGAAGTTAAAACGACGTCGATTTGGGCTTGGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTTTACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCGTGATGCTCACTGGAGCTCTGCATTTATACGACAAGATTGCAGCCGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGAGCTCGAAGGCAGACTACGTGGTGGCGAAAGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGAGTGGACGGAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACCACTTATAACTCAGCTACATTTGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCCGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATTGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCCCACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTTTGTTTTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1446 56.29 MPFPVATFLLLFLPLVVVASSISSLPELDPVRLAQTGVAEARTEMGKLKRRRFGLGDCSTLYEEADWRLAGMLVGENFTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTVMLTGALHLYDKIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVSSKADYVVAKDGSGTHTTINGAVATLARSGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2987241 2990573 - CrPI670011_05g003240.1 Cre05g0324 496837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0324 481 PANTHER PECTINESTERASE 51 472 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre05g0324 481 Gene3D - 161 481 IPR012334 -
Cre05g0324 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 130 IPR035513 -
Cre05g0324 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
Cre05g0324 481 Pfam Plant invertase/pectin methylesterase inhibitor 33 107 IPR006501 GO:0004857(InterPro)
Cre05g0324 481 SUPERFAMILY Pectin lyase-like 163 479 IPR011050 -
Cre05g0324 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 114 IPR035513 -
Cre05g0324 481 FunFam Pectinesterase 160 481 - -
Cre05g0324 481 Pfam Pectinesterase 167 466 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0324 Cre-Chr5:2987241 Cre09g1889 Cre-Chr9:37538322 7.10E-118 dispersed
Cre05g0324 Cre-Chr5:2987241 Cre05g0325 Cre-Chr5:3002288 7.80E-101 tandem
Cre05g0324 Cre-Chr5:2987241 Cre05g0907 Cre-Chr5:8309567 7.30E-107 wgd
Cre05g0324 Cre-Chr5:2987241 Cre09g2047 Cre-Chr9:39579314 1.70E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0324 K01051 - csv:101217635 795.808