Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0325 ATGGGAAGGCATCCGACCACCTTTGTTGTTGTTCTTATTGTTCTTGTTATTCCGACCGACATTTTTTGTTATTCCGAAAAAGAAATAAAACATTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCTTAACAAACAAATCTCCAATCGTCAATAAATCCCATTTCTTTGAAATCTTAGTCCAAACGGCACTCGAACGTGCCGTTTCGGCCCATAAAAACGCTCTTTCTCTCGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGTGTTGACCTCTACGACCAAATCATAACCCGCCTCAACCGAACCGCCGACCGCTGCTCCCCGGTCGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTCGGCTACTCATTGACGGCCAATAATGTTTCGAAGCTGATTAGCGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGGAAGGGTATGAACCGCAGACCATGGCGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAATTGCTGCAGGCGGGGTCTCCGAAGGCGAACGTCGTGGTGGCGAAGGATGGGTCAGGGAATTTTCAGACGGTGAAGGAGGCGGTGGCCGCCGCGAAGGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTCATGTTGATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACTTTCAGAAACACAGCCGGAGCAAAGAACCACCAGGCGGTGGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTCTACCGTTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGCGATCCTCCGAACAAAACCATCACACTCACCGCCCAAGGCCGCACCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCGTGGAAGCAGTACTCGCGGACGGTTTTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATACCGGTCCGGGAGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCGAAGTTCACTGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.73 MGRHPTTFVVVLIVLVIPTDIFCYSEKEIKHWCSQTPYPAPCEEFLKTKALTNKSPIVNKSHFFEILVQTALERAVSAHKNALSLGPKCRNAKEKTAWTDCVDLYDQIITRLNRTADRCSPVDAQTWLSAALTALETCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPEGYEPQTMAEGFPTWVRPGDRKLLQAGSPKANVVVAKDGSGNFQTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRTDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWKQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3002288 3007061 + CrPI670011_05g003250.1 Cre05g0325 496838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0325 509 Gene3D - 202 509 IPR012334 -
Cre05g0325 509 FunFam Pectinesterase 201 509 - -
Cre05g0325 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Cre05g0325 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre05g0325 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cre05g0325 509 SMART PMEI_2 24 169 IPR006501 GO:0004857(InterPro)
Cre05g0325 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Cre05g0325 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857(InterPro)
Cre05g0325 509 PANTHER PECTINESTERASE 10 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre05g0325 509 CDD PMEI-like_3 32 174 - -
Cre05g0325 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Cre05g0325 509 NCBIfam pectinesterase inhibitor domain 6 161 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0325 Cre-Chr5:3002288 Cre09g2047 Cre-Chr9:39579314 1.10E-169 dispersed
Cre05g0324 Cre-Chr5:2987241 Cre05g0325 Cre-Chr5:3002288 7.80E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0325 K01051 - csv:101217552 927.546