Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0332 ATGCTCTCTTCACATTTCCTACCTTCGAAAAACCCTATTTCCACCAACCCCACTTCCCCTTTTTCCCTATTTTACCCAAATCTCCTCCCAACCGTCCGATCGAAATCTACCAATCGCCCACAAATCTCTGCCTTCTCCACCATTAATGGCGTCTCTTCAAAACCCACGTCTCAGATTCTCAATCCAATCCCCAAATCGAGCAGATTCTGCAAAAATCCAGTGAACCCATTTCGGTTTCTTCCGTGCAAACCTAACCCCCTTGTCCCCGCCGCCGCTGCCGCAGACGGCGGCGATACCACCGCTGATTCCGCCTCCAATGGTAAAACCTTTCAGCTCGCCATCGTCTTTGGGCTCTGGTATTTTCAGAACATCGTCTTCAATATCTACAACAAGAAGGTTCTCAACATTTTCCCTTTCCCATGGCTTCTCGCTTCGTTTCAACTCTTCGCTGGATCGGTTTGGATGCTCGTTCTTTGGTCCTTTAAGCTTCAGCCATGCCCTAAAATCTCAAAGCCCTTTCTAATCGCTCTCCTCGGCCCCGCTTTGTTTCACACAATCGGCCATATCTCTGCCTGCGTTTCGTTCTCAAAAGTCGCTGTTTCTTTCACTCATGTCATTAAATCGGCCGAACCGGTCTTCTCGGTTCTTTTCTCCTCGTTCCTCGGCGATTCGTATCCAATCCAGGTCTGGCTTTCGATTCTCCCCATTGTTTTTGGCTGCTCTTTGGCCGCCATTACTGAAGCTACCTTCAATTTTGAAGGTCTATCAGGCGCCATGATTAGCAATGTAGGGTTTGTGTTAAGAAACATTTACTCCAAAAGGAGCTTGCAGAACTTCAAGGAGGTTAATGGGTTGAATTTATATGGTTGGATTAGTATAATTTCTTTGTTGTATCTGTTTCCTGTGGCCATTTTCGTCGAAGGGTCAAAATGGGTTCAAGGATATCATCAAGCAATTGCTTCCATTGGAAATGCTTCAACATTATATATCTGGGTTTTGATTTCTGGCATATTTTATCATCTTTATAATCAATCTTCGTACCAAGCTTTGGATGAGATCAGTCCTTTGACATTCTCTGTTGGGAATACAATGAAGAGAGTGGTTGTGATTGTGGCTTCTGTTTTGGTTTTTAGAAATCCAGTTAGGCCTTTAAATGCTGTTGGTTCTGCCATTGCCATTTTTGGGACTTTTCTGTATTCTCAGACAACAACTAAAAAGAGTGCTAAGAAGATTGAGGAAGGTGAAAAGAAGGAATGA 1257 44.15 MLSSHFLPSKNPISTNPTSPFSLFYPNLLPTVRSKSTNRPQISAFSTINGVSSKPTSQILNPIPKSSRFCKNPVNPFRFLPCKPNPLVPAAAAADGGDTTADSASNGKTFQLAIVFGLWYFQNIVFNIYNKKVLNIFPFPWLLASFQLFAGSVWMLVLWSFKLQPCPKISKPFLIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGDSYPIQVWLSILPIVFGCSLAAITEATFNFEGLSGAMISNVGFVLRNIYSKRSLQNFKEVNGLNLYGWISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVASVLVFRNPVRPLNAVGSAIAIFGTFLYSQTTTKKSAKKIEEGEKKE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3069926 3071182 - CrPI670011_05g003320.1 Cre05g0332 496845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0332 418 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 401 - -
Cre05g0332 418 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 111 409 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cre05g0332 418 Pfam Triose-phosphate Transporter family 111 400 IPR004853 -
Cre05g0332 418 PANTHER SOLUTE CARRIER FAMILY 35 108 402 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0543 Cre-Chr1:4717185 Cre05g0332 Cre-Chr5:3069926 4.10E-63 dispersed
Cre01g1262 Cre-Chr1:25823300 Cre05g0332 Cre-Chr5:3069926 1.60E-62 dispersed
Cre05g0332 Cre-Chr5:3069926 Cre05g1573 Cre-Chr5:24232818 6.20E-86 dispersed
Cre05g0332 Cre-Chr5:3069926 Cre04g1827 Cre-Chr4:36055411 3.60E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0332 K15283 - csv:101219051 741.11