Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0336 ATGGAAGAAGAGCTGAAACTATTCAGAACGTGGTCGAGTCCGTTCCCTCTGAGGATAGTATGGGCGTTGAAATTGAAAGGATTAGAATACGATACCGTTTACGAAGATCTGGCCAACAAGAGCCCCTTGCTTTTGGAGTACAATCCGATTCATAAGAAAGTTCCGGTGCTCGTCCATGGCGGAAAGCCGATCGCCGAATCGCTCGTTATTCTTGAATACATCGACGAAACATGGAAGCAAAATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCCGTTGCTCGCTTTTGGGCCAAATTTGGGGATGACAAGGTTTTGGAATCTATAAAGAAAGTGTTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCTTGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAGGGAAAGAGGTTCTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTACGGTTGGGTGGCTTGCAAACATAGTAAGTGTAGTGGAGGAAGTTGTTGGAGTTGAACTGATAACTGAACAAAGGTTTCCCCTCTTGTCCAAATGGATAAAGGAATTTGCTGCCTCTCCAATCATCAATGAAAACTGGCCGCCTAGAGACAAGCTTGTCACTAAGTACCAAGCAATGCGTCAAACTTTTATGAATAAACAAGCATAA 669 44.25 MEEELKLFRTWSSPFPLRIVWALKLKGLEYDTVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIDETWKQNPLLPQDPYQRAVARFWAKFGDDKVLESIKKVFMNQGKVREEGVEEALENLKHLEEELKGKRFFGGEAIGFVDITVGWLANIVSVVEEVVGVELITEQRFPLLSKWIKEFAASPIINENWPPRDKLVTKYQAMRQTFMNKQA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3082789 3084951 - CrPI670011_05g003360.1 Cre05g0336 496849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0336 222 SUPERFAMILY Thioredoxin-like 5 104 IPR036249 -
Cre05g0336 222 FunFam Tau class glutathione S-transferase 84 220 - -
Cre05g0336 222 FunFam Tau class glutathione S-transferase 1 86 - -
Cre05g0336 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cre05g0336 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cre05g0336 222 SFLD Glutathione Transferase (cytosolic) 2 221 IPR040079 -
Cre05g0336 222 Gene3D - 84 221 - -
Cre05g0336 222 Gene3D Glutaredoxin 1 83 - -
Cre05g0336 222 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Cre05g0336 222 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cre05g0336 222 Pfam Glutathione S-transferase, C-terminal domain 117 194 IPR004046 -
Cre05g0336 222 Coils Coil 121 141 - -
Cre05g0336 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cre05g0336 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Cre05g0336 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre05g0336 222 CDD GST_N_Tau 5 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1561 Cre-Chr1:28787768 Cre05g0336 Cre-Chr5:3082789 2.10E-46 dispersed
Cre01g1562 Cre-Chr1:28793426 Cre05g0336 Cre-Chr5:3082789 1.20E-44 dispersed
Cre04g0861 Cre-Chr4:27270641 Cre05g0336 Cre-Chr5:3082789 7.70E-50 dispersed
Cre04g0862 Cre-Chr4:27277182 Cre05g0336 Cre-Chr5:3082789 9.60E-49 dispersed
Cre05g0336 Cre-Chr5:3082789 Cre06g2315 Cre-Chr6:31098298 2.10E-56 dispersed
Cre05g0336 Cre-Chr5:3082789 Cre05g2601 Cre-Chr5:37106836 5.50E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0336 K00799 - csv:101219529 408.683