Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0345 | ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCTGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACGGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCGCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTACCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGGAATGTTGTTGGATCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACGGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCCGGGTTGCCGTTCTTTAATCTACCGCCGAGCATGGCGGGGAATCAAAATCAGCTGCAGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCGTCTTATTGA | 765 | 56.86 | MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDGSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEQPSNGGGGSLSNPFPDPSAGLPFFNLPPSMAGNQNQLQVDGWGGGNSGGRASY | 254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3171780 | 3172711 | + | CrPI670011_05g003450.1 | Cre05g0345 | 496858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0345 | 254 | CDD | DUF296 | 76 | 185 | IPR005175 | - | |
Cre05g0345 | 254 | Gene3D | - | 75 | 203 | - | - | |
Cre05g0345 | 254 | MobiDBLite | consensus disorder prediction | 199 | 254 | - | - | |
Cre05g0345 | 254 | MobiDBLite | consensus disorder prediction | 26 | 65 | - | - | |
Cre05g0345 | 254 | MobiDBLite | consensus disorder prediction | 26 | 44 | - | - | |
Cre05g0345 | 254 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 76 | 188 | IPR005175 | - | |
Cre05g0345 | 254 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 207 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre05g0345 | 254 | FunFam | AT-hook motif nuclear-localized protein | 75 | 202 | - | - | |
Cre05g0345 | 254 | MobiDBLite | consensus disorder prediction | 229 | 243 | - | - | |
Cre05g0345 | 254 | ProSiteProfiles | PPC domain profile profile. | 72 | 214 | IPR005175 | - | |
Cre05g0345 | 254 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 72 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0345 | Cre-Chr5:3171780 | Cre10g0428 | Cre-Chr10:3159720 | 4.20E-77 | dispersed | |
Cre07g0929 | Cre-Chr7:8991845 | Cre05g0345 | Cre-Chr5:3171780 | 2.10E-14 | transposed | |
Cre10g0427 | Cre-Chr10:3144026 | Cre05g0345 | Cre-Chr5:3171780 | 4.60E-13 | wgd | |
Cre05g0345 | Cre-Chr5:3171780 | Cre06g0843 | Cre-Chr6:1739630 | 1.10E-88 | wgd | |
Cre05g0345 | Cre-Chr5:3171780 | Cre09g1156 | Cre-Chr9:12775472 | 3.00E-83 | wgd | |
Cre05g0345 | Cre-Chr5:3171780 | Cre09g2014 | Cre-Chr9:39222712 | 1.20E-20 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0345 | - | - | - | 0.0 |