Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0345 ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCTGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACGGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCGCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTACCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGGAATGTTGTTGGATCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACGGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCCGGGTTGCCGTTCTTTAATCTACCGCCGAGCATGGCGGGGAATCAAAATCAGCTGCAGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCGTCTTATTGA 765 56.86 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDGSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEQPSNGGGGSLSNPFPDPSAGLPFFNLPPSMAGNQNQLQVDGWGGGNSGGRASY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3171780 3172711 + CrPI670011_05g003450.1 Cre05g0345 496858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0345 254 CDD DUF296 76 185 IPR005175 -
Cre05g0345 254 Gene3D - 75 203 - -
Cre05g0345 254 MobiDBLite consensus disorder prediction 199 254 - -
Cre05g0345 254 MobiDBLite consensus disorder prediction 26 65 - -
Cre05g0345 254 MobiDBLite consensus disorder prediction 26 44 - -
Cre05g0345 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Cre05g0345 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 207 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre05g0345 254 FunFam AT-hook motif nuclear-localized protein 75 202 - -
Cre05g0345 254 MobiDBLite consensus disorder prediction 229 243 - -
Cre05g0345 254 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Cre05g0345 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0345 Cre-Chr5:3171780 Cre10g0428 Cre-Chr10:3159720 4.20E-77 dispersed
Cre07g0929 Cre-Chr7:8991845 Cre05g0345 Cre-Chr5:3171780 2.10E-14 transposed
Cre10g0427 Cre-Chr10:3144026 Cre05g0345 Cre-Chr5:3171780 4.60E-13 wgd
Cre05g0345 Cre-Chr5:3171780 Cre06g0843 Cre-Chr6:1739630 1.10E-88 wgd
Cre05g0345 Cre-Chr5:3171780 Cre09g1156 Cre-Chr9:12775472 3.00E-83 wgd
Cre05g0345 Cre-Chr5:3171780 Cre09g2014 Cre-Chr9:39222712 1.20E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0345 - - - 0.0