Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0360 | ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAGCTCAATTCAAATCAGCAATCACAGCCTTCCAAGTTTGGAATCCAACACTTCTTCGAACGCCACTCTCAAAATGTTGCGCATTCTCAGAAGATCACTTCACAAACTTCCGATTCAAAAACTGATGTTTCTAACTCTCTGAATCATGGAGATGATTCGAATGTGGGACGGTCAGATTCTAAGGACGCAGCTGCGGCGGCGACAGCTCAAAAGTCTGAGTCGCGGGTGCTTCTTGTGAGTGATGCGGTCTTAGCTTCTGAAAACCCTAAGGTGCCTCAGGGGAATGATGCGGGCTGTTCGTCTTTGAGTACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATACTGGCGATGACCTTTCTAACGACCTGTCTCCAGAATTTTCCAAGTCAGCGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGAATGCTGATTAAGCAAAGTCAGGATGAGGGGACTACAAATGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCAAAGCAACTGCCGGAAACTATAAGAGTTCTGGCGAACTCATCAAGGCTAAGTTCTTTGAGAATTCGACAGTGTTCACGAAATAAGACTTCCTCTGTCAAGCCTGGGAATTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAACGAGTTCGTTAAATAAGACTGGACTGAAAAGGTTAAATCCTAAAGATGAAATGGAACCCAATGGAGCGATTGATAGTTCGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCAGACGCCCCCATCTATGTCATACTGCGACAAGATTTCCAATGATGTTGCTGCATGTAATGAAGCACCTGAACACCCTATTTTAAGGCCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATAGCTGTTGATACTGTGGCTCCTTCCATTGACTTGGAGGAGGATTCATCTGAATTACGAGGTAGAAATGGTAACACATTGACTACCAGATTTGATTCAGCTGCTATGAAAGTTCCTAAAAAGATTCCAGACACCGTAATGAAGACATCCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATCTGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAGCAAAGTGGAGAAGAGCGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGAGCAAGGAAGATGTCATATTGACCACGACAATAATTTTGTTATCCTACACCCTGATATACTTGTCTCTGGAACTCGGGTTGCAGGTCACTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGTTGAAAAGTAACGAACAGTCTATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCAACTGTTGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTGTATGCATGCGGAGCAAATGAAAAGGATATACACGAAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAGATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCGGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCGGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGATTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGACGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGATGGTAGTTCAAACACTGCTTCGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATTGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTGTACGGATTGGAAGAATTAATGCAGTGCACGAAGACGTTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACGCCTTAATATATGGAGACAGATTGCGTTGTGGTTCTGCAGAAATCGCGAACGCAAAGCTTGAACTTTCAAGTTCAAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGAAGGGTTGGAAAGGATGGAAGAGAAGAGCACATTTGA | 4230 | 42.7 | MPPRKKPHSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKITSQTSDSKTDVSNSLNHGDDSNVGRSDSKDAAAAATAQKSESRVLLVSDAVLASENPKVPQGNDAGCSSLSTTPENLIAACGNTGDDLSNDLSPEFSKSASLKRFKFSPGMLIKQSQDEGTTNDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVKPGNFEQLSSPNPKPSERSTSSLNKTGLKRLNPKDEMEPNGAIDSSSGSRVANSQSPFQTPPSMSYCDKISNDVAACNEAPEHPILRPHKKALLELLDQVEDVIAVDTVAPSIDLEEDSSELRGRNGNTLTTRFDSAAMKVPKKIPDTVMKTSPCDFLVLEVTEKCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDEQGRCHIDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIHETMNEAVPKILHWITIFKSPMGSKAPNVEFRSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTASISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFVRIGRINAVHEDVRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSAEIANAKLELSSSKLCSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTRRVGKDGREEHI | 1409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3296215 | 3313836 | - | CrPI670011_05g003600.1 | Cre05g0360 | 496873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0360 | 1409 | Gene3D | - | 845 | 910 | - | - | |
Cre05g0360 | 1409 | Pfam | AAA domain | 1069 | 1136 | IPR041677 | GO:0004386(InterPro) | |
Cre05g0360 | 1409 | Pfam | AAA domain | 968 | 1060 | IPR041677 | GO:0004386(InterPro) | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 259 | 282 | - | - | |
Cre05g0360 | 1409 | CDD | SF1_C_Upf1 | 1169 | 1362 | IPR047187 | - | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 210 | 245 | - | - | |
Cre05g0360 | 1409 | FunFam | DNA replication helicase | 1167 | 1377 | - | - | |
Cre05g0360 | 1409 | Pfam | AAA domain | 1145 | 1345 | IPR041679 | - | |
Cre05g0360 | 1409 | Gene3D | - | 911 | 1059 | IPR027417 | - | |
Cre05g0360 | 1409 | Gene3D | - | 1065 | 1166 | IPR027417 | - | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 34 | 65 | - | - | |
Cre05g0360 | 1409 | Gene3D | - | 1167 | 1374 | IPR027417 | - | |
Cre05g0360 | 1409 | PANTHER | DNA2/NAM7 HELICASE FAMILY | 208 | 1363 | IPR045055 | GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER) | |
Cre05g0360 | 1409 | FunFam | DNA replication helicase Dna2 | 903 | 1166 | - | - | |
Cre05g0360 | 1409 | Gene3D | - | 458 | 722 | IPR011604 | - | |
Cre05g0360 | 1409 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 967 | 1354 | IPR027417 | - | |
Cre05g0360 | 1409 | Pfam | DNA replication factor Dna2 | 403 | 605 | IPR014808 | - | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Cre05g0360 | 1409 | CDD | DEXXQc_DNA2 | 968 | 1168 | IPR026851 | GO:0017116(InterPro) | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 210 | 282 | - | - | |
Cre05g0360 | 1409 | CDD | DNA2_N-like | 458 | 693 | - | - | |
Cre05g0360 | 1409 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
Cre05g0360 | 1409 | FunFam | DNA replication helicase Dna2 | 566 | 722 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0360 | Cre-Chr5:3296215 | Cre10g1832 | Cre-Chr10:32866972 | 3.70E-42 | dispersed | |
Cre10g0450 | Cre-Chr10:3465631 | Cre05g0360 | Cre-Chr5:3296215 | 2.00E-31 | wgd | |
Cre05g0360 | Cre-Chr5:3296215 | Cre09g1988 | Cre-Chr9:38862077 | 1.00E-36 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0360 | K10742 | - | csv:101220726 | 2422.51 |