Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0360 ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAGCTCAATTCAAATCAGCAATCACAGCCTTCCAAGTTTGGAATCCAACACTTCTTCGAACGCCACTCTCAAAATGTTGCGCATTCTCAGAAGATCACTTCACAAACTTCCGATTCAAAAACTGATGTTTCTAACTCTCTGAATCATGGAGATGATTCGAATGTGGGACGGTCAGATTCTAAGGACGCAGCTGCGGCGGCGACAGCTCAAAAGTCTGAGTCGCGGGTGCTTCTTGTGAGTGATGCGGTCTTAGCTTCTGAAAACCCTAAGGTGCCTCAGGGGAATGATGCGGGCTGTTCGTCTTTGAGTACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATACTGGCGATGACCTTTCTAACGACCTGTCTCCAGAATTTTCCAAGTCAGCGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGAATGCTGATTAAGCAAAGTCAGGATGAGGGGACTACAAATGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCAAAGCAACTGCCGGAAACTATAAGAGTTCTGGCGAACTCATCAAGGCTAAGTTCTTTGAGAATTCGACAGTGTTCACGAAATAAGACTTCCTCTGTCAAGCCTGGGAATTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAACGAGTTCGTTAAATAAGACTGGACTGAAAAGGTTAAATCCTAAAGATGAAATGGAACCCAATGGAGCGATTGATAGTTCGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCAGACGCCCCCATCTATGTCATACTGCGACAAGATTTCCAATGATGTTGCTGCATGTAATGAAGCACCTGAACACCCTATTTTAAGGCCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATAGCTGTTGATACTGTGGCTCCTTCCATTGACTTGGAGGAGGATTCATCTGAATTACGAGGTAGAAATGGTAACACATTGACTACCAGATTTGATTCAGCTGCTATGAAAGTTCCTAAAAAGATTCCAGACACCGTAATGAAGACATCCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATCTGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAGCAAAGTGGAGAAGAGCGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGAGCAAGGAAGATGTCATATTGACCACGACAATAATTTTGTTATCCTACACCCTGATATACTTGTCTCTGGAACTCGGGTTGCAGGTCACTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGTTGAAAAGTAACGAACAGTCTATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCAACTGTTGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTGTATGCATGCGGAGCAAATGAAAAGGATATACACGAAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAGATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCGGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCGGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGATTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGACGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGATGGTAGTTCAAACACTGCTTCGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATTGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTGTACGGATTGGAAGAATTAATGCAGTGCACGAAGACGTTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACGCCTTAATATATGGAGACAGATTGCGTTGTGGTTCTGCAGAAATCGCGAACGCAAAGCTTGAACTTTCAAGTTCAAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGAAGGGTTGGAAAGGATGGAAGAGAAGAGCACATTTGA 4230 42.7 MPPRKKPHSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKITSQTSDSKTDVSNSLNHGDDSNVGRSDSKDAAAAATAQKSESRVLLVSDAVLASENPKVPQGNDAGCSSLSTTPENLIAACGNTGDDLSNDLSPEFSKSASLKRFKFSPGMLIKQSQDEGTTNDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVKPGNFEQLSSPNPKPSERSTSSLNKTGLKRLNPKDEMEPNGAIDSSSGSRVANSQSPFQTPPSMSYCDKISNDVAACNEAPEHPILRPHKKALLELLDQVEDVIAVDTVAPSIDLEEDSSELRGRNGNTLTTRFDSAAMKVPKKIPDTVMKTSPCDFLVLEVTEKCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDEQGRCHIDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIHETMNEAVPKILHWITIFKSPMGSKAPNVEFRSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTASISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFVRIGRINAVHEDVRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSAEIANAKLELSSSKLCSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTRRVGKDGREEHI 1409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3296215 3313836 - CrPI670011_05g003600.1 Cre05g0360 496873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0360 1409 Gene3D - 845 910 - -
Cre05g0360 1409 Pfam AAA domain 1069 1136 IPR041677 GO:0004386(InterPro)
Cre05g0360 1409 Pfam AAA domain 968 1060 IPR041677 GO:0004386(InterPro)
Cre05g0360 1409 MobiDBLite consensus disorder prediction 259 282 - -
Cre05g0360 1409 CDD SF1_C_Upf1 1169 1362 IPR047187 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 210 245 - -
Cre05g0360 1409 FunFam DNA replication helicase 1167 1377 - -
Cre05g0360 1409 Pfam AAA domain 1145 1345 IPR041679 -
Cre05g0360 1409 Gene3D - 911 1059 IPR027417 -
Cre05g0360 1409 Gene3D - 1065 1166 IPR027417 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 34 65 - -
Cre05g0360 1409 Gene3D - 1167 1374 IPR027417 -
Cre05g0360 1409 PANTHER DNA2/NAM7 HELICASE FAMILY 208 1363 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Cre05g0360 1409 FunFam DNA replication helicase Dna2 903 1166 - -
Cre05g0360 1409 Gene3D - 458 722 IPR011604 -
Cre05g0360 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 967 1354 IPR027417 -
Cre05g0360 1409 Pfam DNA replication factor Dna2 403 605 IPR014808 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 1 84 - -
Cre05g0360 1409 CDD DEXXQc_DNA2 968 1168 IPR026851 GO:0017116(InterPro)
Cre05g0360 1409 MobiDBLite consensus disorder prediction 210 282 - -
Cre05g0360 1409 CDD DNA2_N-like 458 693 - -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 12 26 - -
Cre05g0360 1409 FunFam DNA replication helicase Dna2 566 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0360 K10742 - - csv:101220726 2422.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0360 Cre-Chr5:3296215 Cre10g1832 Cre-Chr10:32866972 3.70E-42 dispersed
Cre10g0450 Cre-Chr10:3465631 Cre05g0360 Cre-Chr5:3296215 2.00E-31 wgd
Cre05g0360 Cre-Chr5:3296215 Cre09g1988 Cre-Chr9:38862077 1.00E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G14700 59.1 3.0e-254 875.2
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G12620 61.2 1.6e-263 906.0
Cre08g1518 . 65 425 Core DNA Replication Machinery Family AT2G37560 65.7 3.0e-142 501.9
Cre07g0857 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.9e-152 535.0
Cre06g1130 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 6.1e-153 538.1
Cre11g1348 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.2e-94 341.7
Cre01g0220 . 61 854 Core DNA Replication Machinery Family AT1G79150 59.6 2.1e-247 852.4
Cre10g1454 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1350.9
Cre04g2057 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.9e-269 922.9
Cre02g0837 . 99 845 Core DNA Replication Machinery Family AT2G16440 77.2 0.0e+00 1142.5
Cre11g0844 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cre04g2202 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.2 0.0e+00 1167.9
Cre09g0492 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cre02g2271 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.8e-163 571.2
Cre02g2271 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.1e-143 506.1
Cre09g0839 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.0 1.1e-256 882.9
Cre10g2170 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1094.3
Cre09g1589 . 58 456 Core DNA Replication Machinery Family AT2G14050 85.7 3.5e-197 685.3
Cre09g1588 . 9 238 Core DNA Replication Machinery Family AT2G14050 68.7 2.5e-86 317.0
Cre02g1504 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.4 6.9e-119 424.5
Cre09g0257 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 4.3e-71 264.6
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 4.3e-71 264.6
Cre05g0223 . 6 155 Core DNA Replication Machinery Family AT5G49010 65.3 2.8e-49 192.2
Cre02g1551 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.6
Cre01g1501 . 24 641 Core DNA Replication Machinery Family AT1G67630 59.5 9.8e-205 710.3
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre08g0134 . 211 654 Core DNA Replication Machinery Family AT5G41880 65.5 1.7e-177 619.4
Cre04g1149 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.5 0.0e+00 1788.9
Cre10g1868 . 1 428 Core DNA Replication Machinery Family AT2G42120 74.8 8.5e-195 676.8
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre09g1984 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 5.5e-38 154.1
Cre02g2512 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2983.0
Cre01g0417 . 62 2110 Core DNA Replication Machinery Family AT1G08260 67.8 0.0e+00 2775.3
Cre02g2512 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2947.9
Cre01g0417 . 84 2190 Core DNA Replication Machinery Family AT2G27120 65.2 0.0e+00 2722.6
Cre01g1601 . 726 1192 Core DNA Replication Machinery Family AT5G22110 66.2 6.7e-180 627.5
Cre02g2561 . 273 1004 Core DNA Replication Machinery Family AT5G22010 73.4 1.2e-302 1036.2
Cre10g0592 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.4e-173 605.1
Cre04g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.2e-178 622.9
Cre11g2009 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.3e-144 508.8
Cre08g0540 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.9e-155 545.8
Cre11g0650 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.1 4.8e-244 840.9
Cre10g0366 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 4.1e-195 678.3
Cre06g2422 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.1 7.0e-248 853.6
Cre10g0366 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.7 9.6e-227 783.9
Cre06g2422 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.3e-240 828.2
Cre10g0366 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.7 3.7e-225 778.5
Cre03g2054 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 6.4e-184 640.6
Cre05g0360 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 8.0e-300 1026.9
Cre07g1923 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.4e-115 412.9
Cre02g2464 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.1 1.4e-296 1015.8
Cre02g2464 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.1e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007869 2 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 1 1 1 2 36