Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0360 ATGCCTCCAAGGAAGAAGCCTCATTCTTCTTCCAAGAAGCTCAATTCAAATCAGCAATCACAGCCTTCCAAGTTTGGAATCCAACACTTCTTCGAACGCCACTCTCAAAATGTTGCGCATTCTCAGAAGATCACTTCACAAACTTCCGATTCAAAAACTGATGTTTCTAACTCTCTGAATCATGGAGATGATTCGAATGTGGGACGGTCAGATTCTAAGGACGCAGCTGCGGCGGCGACAGCTCAAAAGTCTGAGTCGCGGGTGCTTCTTGTGAGTGATGCGGTCTTAGCTTCTGAAAACCCTAAGGTGCCTCAGGGGAATGATGCGGGCTGTTCGTCTTTGAGTACGACGCCTGAGAATTTGATTGCAGCTTGTGGAAATACTGGCGATGACCTTTCTAACGACCTGTCTCCAGAATTTTCCAAGTCAGCGTCCCTGAAGCGCTTCAAGTTCTCTCCCGGAATGCTGATTAAGCAAAGTCAGGATGAGGGGACTACAAATGATGAGATTACATGGAAGATATCTCCAGTAAACGAAAGGCTTCAGGCTGTTTCAAAGCAACTGCCGGAAACTATAAGAGTTCTGGCGAACTCATCAAGGCTAAGTTCTTTGAGAATTCGACAGTGTTCACGAAATAAGACTTCCTCTGTCAAGCCTGGGAATTTTGAGCAGTTGAGTTCACCAAACCCGAAACCTTCTGAAAGATCAACGAGTTCGTTAAATAAGACTGGACTGAAAAGGTTAAATCCTAAAGATGAAATGGAACCCAATGGAGCGATTGATAGTTCGAGTGGCTCTAGAGTAGCTAACAGTCAGAGTCCATTCCAGACGCCCCCATCTATGTCATACTGCGACAAGATTTCCAATGATGTTGCTGCATGTAATGAAGCACCTGAACACCCTATTTTAAGGCCACACAAAAAGGCATTACTTGAGCTTTTGGATCAAGTAGAAGATGTCATAGCTGTTGATACTGTGGCTCCTTCCATTGACTTGGAGGAGGATTCATCTGAATTACGAGGTAGAAATGGTAACACATTGACTACCAGATTTGATTCAGCTGCTATGAAAGTTCCTAAAAAGATTCCAGACACCGTAATGAAGACATCCCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAAATGTGAGCTGGCTGATACATCTGGAGTAAAACGCTCGTATAAGGTTCTTCGTTTGTTAAATGAGCAAAGTGGAGAAGAGCGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGACACCGTGAATGTTATTGGTGAATTTGATGAGCAAGGAAGATGTCATATTGACCACGACAATAATTTTGTTATCCTACACCCTGATATACTTGTCTCTGGAACTCGGGTTGCAGGTCACTTGACCTGTCCAAGGAGGAGTGTTCTTGATGAGAGGTTGAAAAGTAACGAACAGTCTATTTCAGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTATAGAAGAGGCACCAACTGTTGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTTCAGAAAAGTATGGAAAATGTGTATGCATGCGGAGCAAATGAAAAGGATATACACGAAACCATGAATGAAGCAGTTCCAAAAATTTTGCATTGGATCACCATCTTCAAAAGCCCAATGGGTTCTAAAGCACCTAATGTTGAGTTTAGATCTGAGGATGGTCCCAGGAAAGTTAGTATATCGGAGGTGATTGATATCGAGGAGATGGCATGGGCTCCAAAATATGGTTTGAAAGGAATGATTGATGCTTCTGTCAGGGTAAACATAATGTCAAATTATAGTAAATGTGCGGAGAATGTCATGCCTTTAGAGTTTAAAACCGGAAAGGTGCCAGCTGGCCAGTCCTCCATGGAACATTGTGCCCAAGTGATCTTGTACACTCTACTTATGTCCGAGAGGTATCACAAACATGTTGGTTATGGTCTCCTTTATTATCTCCGGTCGGATCAGACACAGGGTATCCGGGTTCAAAGATCTGACTTGGTAGGGTTAATCATGCGTCGCAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTCCCCCCTATGTTACAGATTCCAAATGTGTGCAAAGGATGCCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGGAGCAAAGAGACCAGTGGGCTTGGAGTTTTATTTGATTCCCATACAGATCACTTGAAAGCTTCTCATGGTATTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAGGCCAAGGAGACGGAGATTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCAGAGAAAAATCAAATGTCTACCTGTCTTTCTTCTATTGTTCTTAGTACGTTGGATGACCAACCACATTGTACTTTTGAAAAGGACAACCGAATCTGCTATCGTTTTGTGCGTCAAGATATGCCTTCTCTGTGTTTGAAAGATTCAAATGATGGTAGTTCAAACACTGCTTCGATAAGTGACATGGACAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCGAGTGGGATTATAACAGATCTGAGCAGCCTCCATATATCCGTTTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACAGAAGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCGTTTGCAGTCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATTGTAGATCTTGCGGCTCCAAGATTTGATGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTACATCTGGTCAGAGAAGAATTTAAATGATGACCAACGACGAGCTATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCTACAATGGTTCATGCTGTGAAGGCATTGTTGATGAGAGGTGTATCCATTTTGCTCACGTCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATCTCAGAACATTGATTTTGTACGGATTGGAAGAATTAATGCAGTGCACGAAGACGTTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGTGTGGAAGACATCAGAATGAGATTGGACCAAGTGAAAGTTGTTGCAGTTACTTGTTTAGGGATAACTAGTCCCTTACTCGTCAATAAAAAATTTGATATATGCATAATGGACGAAGCTGGACAGACCACCCTTCCAGTTTCGCTTGGGCCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAGAGTACAGAGGCTCGGGAAAATGGACTGGGGATAAGCTTATTTTGTAGGCTTTCAGAAGCACATCCTCAAGCAATTTCCGCATTGCAAAGCCAGTATCGCATGTGCCGAGACATTATGGAATTATCAAACGCCTTAATATATGGAGACAGATTGCGTTGTGGTTCTGCAGAAATCGCGAACGCAAAGCTTGAACTTTCAAGTTCAAAGTTGTGTTCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACAAGAGATCACAAGATTGTGAACAACCCAACTGAGGCTAGCATAGTAGCAGAGGTGACGAAGGGATTGCTTGATGGTGGAATTAAGGGGAATGAAGTTGGCATCATTACCCCGTATAACGCCCAGGCAAGCATCATTCGTCTAGCTATCAACATAGCCTCTGTGGAGGTACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTCGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACCCGTGCCAAGAAAAAGCTAATCATGGTGGGATCACGCAAAACACTATCAAAAGTTCCACTGCTGAAGCTTCTAATCAAGAAGGTGGAGGAGCAATCAGGCATCTTGAGTGTTCGTCTCGGGGGTTGTGTATCAAATGCCATGTGGGAAGCACTGAGAAAAAATGTTGTCTACTTGCGGAAAAGGCCATGGACAAGAAGGGTTGGAAAGGATGGAAGAGAAGAGCACATTTGA 4230 42.7 MPPRKKPHSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAHSQKITSQTSDSKTDVSNSLNHGDDSNVGRSDSKDAAAAATAQKSESRVLLVSDAVLASENPKVPQGNDAGCSSLSTTPENLIAACGNTGDDLSNDLSPEFSKSASLKRFKFSPGMLIKQSQDEGTTNDEITWKISPVNERLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVKPGNFEQLSSPNPKPSERSTSSLNKTGLKRLNPKDEMEPNGAIDSSSGSRVANSQSPFQTPPSMSYCDKISNDVAACNEAPEHPILRPHKKALLELLDQVEDVIAVDTVAPSIDLEEDSSELRGRNGNTLTTRFDSAAMKVPKKIPDTVMKTSPCDFLVLEVTEKCELADTSGVKRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDTVNVIGEFDEQGRCHIDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLIEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIHETMNEAVPKILHWITIFKSPMGSKAPNVEFRSEDGPRKVSISEVIDIEEMAWAPKYGLKGMIDASVRVNIMSNYSKCAENVMPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYHKHVGYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPNVCKGCRHLDVCTIYHKMQNGSKETSGLGVLFDSHTDHLKASHGIFFQHWERLIDLEAKETEIVKRGVWHSRSAEKNQMSTCLSSIVLSTLDDQPHCTFEKDNRICYRFVRQDMPSLCLKDSNDGSSNTASISDMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVDLAAPRFDGGCIFSQDPAISYIWSEKNLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKSQNIDFVRIGRINAVHEDVRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGISLFCRLSEAHPQAISALQSQYRMCRDIMELSNALIYGDRLRCGSAEIANAKLELSSSKLCSSWLKEVLNPCKPVIFVCTDLLPAYETRDHKIVNNPTEASIVAEVTKGLLDGGIKGNEVGIITPYNAQASIIRLAINIASVEVHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILSVRLGGCVSNAMWEALRKNVVYLRKRPWTRRVGKDGREEHI 1409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3296215 3313836 - CrPI670011_05g003600.1 Cre05g0360 496873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0360 1409 Gene3D - 845 910 - -
Cre05g0360 1409 Pfam AAA domain 1069 1136 IPR041677 GO:0004386(InterPro)
Cre05g0360 1409 Pfam AAA domain 968 1060 IPR041677 GO:0004386(InterPro)
Cre05g0360 1409 MobiDBLite consensus disorder prediction 259 282 - -
Cre05g0360 1409 CDD SF1_C_Upf1 1169 1362 IPR047187 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 210 245 - -
Cre05g0360 1409 FunFam DNA replication helicase 1167 1377 - -
Cre05g0360 1409 Pfam AAA domain 1145 1345 IPR041679 -
Cre05g0360 1409 Gene3D - 911 1059 IPR027417 -
Cre05g0360 1409 Gene3D - 1065 1166 IPR027417 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 34 65 - -
Cre05g0360 1409 Gene3D - 1167 1374 IPR027417 -
Cre05g0360 1409 PANTHER DNA2/NAM7 HELICASE FAMILY 208 1363 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Cre05g0360 1409 FunFam DNA replication helicase Dna2 903 1166 - -
Cre05g0360 1409 Gene3D - 458 722 IPR011604 -
Cre05g0360 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 967 1354 IPR027417 -
Cre05g0360 1409 Pfam DNA replication factor Dna2 403 605 IPR014808 -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 1 84 - -
Cre05g0360 1409 CDD DEXXQc_DNA2 968 1168 IPR026851 GO:0017116(InterPro)
Cre05g0360 1409 MobiDBLite consensus disorder prediction 210 282 - -
Cre05g0360 1409 CDD DNA2_N-like 458 693 - -
Cre05g0360 1409 MobiDBLite consensus disorder prediction 12 26 - -
Cre05g0360 1409 FunFam DNA replication helicase Dna2 566 722 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0360 Cre-Chr5:3296215 Cre10g1832 Cre-Chr10:32866972 3.70E-42 dispersed
Cre10g0450 Cre-Chr10:3465631 Cre05g0360 Cre-Chr5:3296215 2.00E-31 wgd
Cre05g0360 Cre-Chr5:3296215 Cre09g1988 Cre-Chr9:38862077 1.00E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0360 K10742 - csv:101220726 2422.51