Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0421 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACAGCGGAGCTCCATGAACGATTCGTTGACGCTGTCACTCAGCTCGGCGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCGATGGCTCTCGAGGGCAATGCCCGACATGATGTCGAATGGATGATGAGTAATATTGGATGA 948 50.84 MLSGFSQEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMALEGNARHDVEWMMSNIG 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3812518 3816260 - CrPI670011_05g004210.1 Cre05g0421 496934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0421 315 FunFam Myb family transcription factor 49 107 - -
Cre05g0421 315 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
Cre05g0421 315 Coils Coil 205 225 - -
Cre05g0421 315 MobiDBLite consensus disorder prediction 114 139 - -
Cre05g0421 315 Pfam MYB-CC type transfactor, LHEQLE motif 148 193 IPR025756 -
Cre05g0421 315 Gene3D - 49 108 - -
Cre05g0421 315 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Cre05g0421 315 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Cre05g0421 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Cre05g0421 315 MobiDBLite consensus disorder prediction 113 139 - -
Cre05g0421 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 279 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2184 Cre-Chr2:35487802 Cre05g0421 Cre-Chr5:3812518 5.30E-41 dispersed
Cre04g1728 Cre-Chr4:35400296 Cre05g0421 Cre-Chr5:3812518 1.00E-45 dispersed
Cre05g0421 Cre-Chr5:3812518 Cre10g1479 Cre-Chr10:28623454 1.50E-36 dispersed
Cre05g0421 Cre-Chr5:3812518 Cre01g0200 Cre-Chr1:1398275 1.10E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53607 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0421 - - - 0.0