Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0426 | ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGGTTCGACGAGGATGACGAACCTCCCGGTATCGACCCGGTCTACTTTCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAAGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAAACGGGAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGATAATAATAATAATAATAATAATAATAATAATAATATTAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTCGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGCGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA | 1110 | 47.93 | MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNNNNNNNNNNNINNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAERKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3850628 | 3855782 | - | CrPI670011_05g004260.1 | Cre05g0426 | 496939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0426 | 369 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cre05g0426 | 369 | FunFam | Basic helix-loop-helix transcription factor | 162 | 237 | - | - | |
Cre05g0426 | 369 | MobiDBLite | consensus disorder prediction | 160 | 174 | - | - | |
Cre05g0426 | 369 | Pfam | Helix-loop-helix DNA-binding domain | 172 | 223 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0426 | 369 | MobiDBLite | consensus disorder prediction | 136 | 174 | - | - | |
Cre05g0426 | 369 | ProSiteProfiles | ACT domain profile. | 295 | 369 | IPR002912 | - | |
Cre05g0426 | 369 | PANTHER | TRANSCRIPTION FACTOR FAMA | 94 | 361 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Cre05g0426 | 369 | SMART | finulus | 177 | 228 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0426 | 369 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 171 | 241 | IPR036638 | GO:0046983(InterPro) | |
Cre05g0426 | 369 | CDD | ACT_UUR-ACR-like | 295 | 359 | - | - | |
Cre05g0426 | 369 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
Cre05g0426 | 369 | MobiDBLite | consensus disorder prediction | 136 | 156 | - | - | |
Cre05g0426 | 369 | Gene3D | - | 151 | 236 | IPR036638 | GO:0046983(InterPro) | |
Cre05g0426 | 369 | CDD | bHLH_AtFAMA_like | 174 | 242 | - | - | |
Cre05g0426 | 369 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 171 | 222 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0062 | Cre-Chr5:823121 | Cre05g0426 | Cre-Chr5:3850628 | 2.10E-42 | dispersed | |
Cre05g0426 | Cre-Chr5:3850628 | Cre09g1126 | Cre-Chr9:12013702 | 7.50E-35 | dispersed | |
Cre05g0426 | Cre-Chr5:3850628 | Cre08g1073 | Cre-Chr8:23834758 | 7.20E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53608 | PF00010 | HLH | 7.50E-10 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0426 | K26213 | - | csv:101214530 | 586.26 |