Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0426 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGGTTCGACGAGGATGACGAACCTCCCGGTATCGACCCGGTCTACTTTCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAAGAGGCGGCGGCGGCCGGAGAGGAGGAAGCAGCGGAAACGGGAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGATAATAATAATAATAATAATAATAATAATAATAATATTAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTCGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTGGAAACGACAGCGGAGCGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCCTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1110 47.93 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNNNNNNNNNNNINNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAERKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3850628 3855782 - CrPI670011_05g004260.1 Cre05g0426 496939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0426 369 MobiDBLite consensus disorder prediction 1 26 - -
Cre05g0426 369 FunFam Basic helix-loop-helix transcription factor 162 237 - -
Cre05g0426 369 MobiDBLite consensus disorder prediction 160 174 - -
Cre05g0426 369 Pfam Helix-loop-helix DNA-binding domain 172 223 IPR011598 GO:0046983(InterPro)
Cre05g0426 369 MobiDBLite consensus disorder prediction 136 174 - -
Cre05g0426 369 ProSiteProfiles ACT domain profile. 295 369 IPR002912 -
Cre05g0426 369 PANTHER TRANSCRIPTION FACTOR FAMA 94 361 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cre05g0426 369 SMART finulus 177 228 IPR011598 GO:0046983(InterPro)
Cre05g0426 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 241 IPR036638 GO:0046983(InterPro)
Cre05g0426 369 CDD ACT_UUR-ACR-like 295 359 - -
Cre05g0426 369 MobiDBLite consensus disorder prediction 11 26 - -
Cre05g0426 369 MobiDBLite consensus disorder prediction 136 156 - -
Cre05g0426 369 Gene3D - 151 236 IPR036638 GO:0046983(InterPro)
Cre05g0426 369 CDD bHLH_AtFAMA_like 174 242 - -
Cre05g0426 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 222 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0062 Cre-Chr5:823121 Cre05g0426 Cre-Chr5:3850628 2.10E-42 dispersed
Cre05g0426 Cre-Chr5:3850628 Cre09g1126 Cre-Chr9:12013702 7.50E-35 dispersed
Cre05g0426 Cre-Chr5:3850628 Cre08g1073 Cre-Chr8:23834758 7.20E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53608 PF00010 HLH 7.50E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0426 K26213 - csv:101214530 586.26