Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0440 ATGGCTGGTATTGATGTTTCCAAGTATGCACATAGCCCTGTACACAAGGCTGTGGCCACCAGGGATTATACCAATCTCAAGAGAATCCTTGCAGGCCTTCCACGGCTTTGTAATCCATCTGAGATTCGCACCGAGGCTGCTTCATTAGCTGAGGAAAACAAGGCTGATGCCATTTCTGCCATGGTTGATCGCCGAGATGTTCCGAACCGGGATACTCCACTGCATTTGGCTGTAAAGCTTGGGGATGAGACTGCTACCGAAATGCTTATGGTTGCAGGGGCAGATTGGAGCTTGCAGAACGAGCATGGTTGGAGTGCACTTCAGGAAGCAATTTGCAGTAGACAAGAAGGGATTGCAATGATAATAGTCCGGCATTACCAGCCATTGGCTTGGGCAAAATGGTGTCGGAGATTGCCTCGCTTGATTGAGACTATGCGAAGAATGAGGGATTTCTACATGGAAATCACATTCCACTTTGAGAGTTCGGTGATCCCTTTCATTTCTAGGATTGCTCCTTCAGATACTTACAAGATCTGGAAAAGAGGAGCTAACTTGAGGGCAGATATGACACTGGCTGGTTTTGATGGATTTAGGATCCAACGTGCTGACCAGAGTATTCTTTTTCTTGGCGATGGGACAGAGGATGGGAAAGTGCCTTCTGGTTCACTCTGTATGATCTCACACAAGGAGAAGGAGGTAATGAATGCTTTAGATGGTGCTGGTGCTCAGGCAACTGAAGAAGAGATTAGACAAGAAGTGACAGCAATGTCTCAGACTAATATATTTAGACCTGGAATTGATGTCACTCAGGCCGTTCTTTTGCCCCAGTTGACTTGGAGGCGCCAGGAGAAAACTGAATTGGTGGGTACCTGGAAAGCTAAAGTATACGATATGCATAATGTGGTTGTTAGTATCAAATCCAGGAGGGTCCCTGGGGCGATGACAGATGACGAATTCTTCTCATCATGCAATGAAAATGAAACTGAGAGTGAGGAGTTCGATGACATTTTAACTGAGGATGAACGAAAGCAACTTGAGAATGCACTTAAATTAGATTCATCTGAATTAGCTTCTGAGAATGGTGATGGGATCGTTGCGCATCGGCACAGTTATGTCGAGCAGCGGGAAGTTCCTGTTGAGGATGTAAATGGATGTAGAAATGGAGAGATTCGACAGGAAAAGAAAGGATGGTTTGGGGGATGGAGGAAACGTGATATAAAAAATGAAGGGCAAAAAAAGATTGCTCCTCCAAGAAGCTCCCTTTCTATGGATGACAAGGTGGGTGATCTTCTAGGGGACTGTCCTCCTGAAAATCATAGCAGCAGGCCTGGAAGACATTCTGTAGAGATAGTCTCCGAACACCGAAGAGGAAGGGAAAGCAGAACAACCTCTTCAACATCCGAGAGCAAAAATCGTCACAAGGATGGGAGTCATGAAAATGAGTATAAGAAAGGGTTGAGACCCGTTCTTTGGCTTTCTCCGAACTTTCCTCTACAAACTGAAGAACTATTGCCATTGCTGGATATTTTAGCTAACAAGGTCAAGGCAGTTCGTCGTTTGAGAGAACTGCTTACCACAAAACTCCCACTGGGAACCTTTCCGGTCAAGGTTGCCATACCTGTGGTTCCAACCATCAGAGTGATTGTTACCTTCACCAAGTATGAAGAACTACAGCCAGTGGACGAGTTCGCAACGCCACCGTCGAGCCCTACAGCTGCAGCAGGCAGGGAGAGCCCTTCCGCAACAAATTCCTTGAGTTCATCTTGGTTTCACTGGATTAAAGCCCCATATCAACGCCCGAGCATGTCGACCAGTGTTTCTAGCAGTAGGATAGAAACTCTCGAAGACCCATTTGTCATCCCCCGTGATTACACGTGGGTTACCGCAGAAGCAAAGAAAAAGAAGATGCAGGAAAAGAACAAAGCAAAGAAAGGAAGAAGTCGCCGTGATTGA 1953 46.13 MAGIDVSKYAHSPVHKAVATRDYTNLKRILAGLPRLCNPSEIRTEAASLAEENKADAISAMVDRRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNEHGWSALQEAICSRQEGIAMIIVRHYQPLAWAKWCRRLPRLIETMRRMRDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRADQSILFLGDGTEDGKVPSGSLCMISHKEKEVMNALDGAGAQATEEEIRQEVTAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTELVGTWKAKVYDMHNVVVSIKSRRVPGAMTDDEFFSSCNENETESEEFDDILTEDERKQLENALKLDSSELASENGDGIVAHRHSYVEQREVPVEDVNGCRNGEIRQEKKGWFGGWRKRDIKNEGQKKIAPPRSSLSMDDKVGDLLGDCPPENHSSRPGRHSVEIVSEHRRGRESRTTSSTSESKNRHKDGSHENEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAVRRLRELLTTKLPLGTFPVKVAIPVVPTIRVIVTFTKYEELQPVDEFATPPSSPTAAAGRESPSATNSLSSSWFHWIKAPYQRPSMSTSVSSSRIETLEDPFVIPRDYTWVTAEAKKKKMQEKNKAKKGRSRRD 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3984423 3988019 - CrPI670011_05g004400.1 Cre05g0440 496953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0440 650 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Cre05g0440 650 MobiDBLite consensus disorder prediction 562 583 - -
Cre05g0440 650 SMART ANK_2a 9 38 IPR002110 GO:0005515(InterPro)
Cre05g0440 650 SMART ANK_2a 102 131 IPR002110 GO:0005515(InterPro)
Cre05g0440 650 SMART ANK_2a 69 98 IPR002110 GO:0005515(InterPro)
Cre05g0440 650 MobiDBLite consensus disorder prediction 439 481 - -
Cre05g0440 650 Pfam Ankyrin repeat 71 100 IPR002110 GO:0005515(InterPro)
Cre05g0440 650 SUPERFAMILY Ankyrin repeat 62 128 IPR036770 -
Cre05g0440 650 Pfam GPCR-chaperone 186 625 IPR021832 -
Cre05g0440 650 MobiDBLite consensus disorder prediction 408 481 - -
Cre05g0440 650 MobiDBLite consensus disorder prediction 631 650 - -
Cre05g0440 650 Gene3D - 3 127 IPR036770 -
Cre05g0440 650 FunFam Ankyrin repeat family protein 2 139 - -
Cre05g0440 650 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 1 645 IPR021832 GO:0005737(PANTHER)
Cre05g0440 650 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0440 K21437 - - csv:101217083 1195.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1811 Cre-Chr4:35958247 Cre05g0440 Cre-Chr5:3984423 6.60E-123 dispersed
Cre05g0440 Cre-Chr5:3984423 Cre11g1487 Cre-Chr11:23130552 7.10E-198 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g883 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00400 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00365 Cam05g0397 Cec05g0402 Cco05g0402 Clacu05g0392 Cmu05g0377 Cre05g0440 . Csa03g01118 Chy06g00386 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000559 4 5 4 4 3 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 4 3 3 2 7 4 1 107