Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0447 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAACTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG 1362 47.58 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGATEKLQSSSNSSMAVRLEEAEAEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4069326 4073984 + CrPI670011_05g004470.1 Cre05g0447 496960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0447 453 PANTHER PECTATE LYASE 18-RELATED 22 450 IPR045032 GO:0030570(InterPro)
Cre05g0447 453 Pfam Pectate lyase 190 368 IPR002022 -
Cre05g0447 453 Gene3D - 104 446 IPR012334 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Cre05g0447 453 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Cre05g0447 453 SMART amb_all 179 376 IPR002022 -
Cre05g0447 453 FunFam Pectate lyase 104 446 - -
Cre05g0447 453 Coils Coil 55 75 - -
Cre05g0447 453 SUPERFAMILY Pectin lyase-like 81 448 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0447 Cre-Chr5:4069326 Cre05g2309 Cre-Chr5:34642720 1.70E-153 dispersed
Cre03g0634 Cre-Chr3:5246066 Cre05g0447 Cre-Chr5:4069326 4.40E-177 transposed
Cre08g1690 Cre-Chr8:29305832 Cre05g0447 Cre-Chr5:4069326 6.20E-173 transposed
Cre05g0447 Cre-Chr5:4069326 Cre06g1543 Cre-Chr6:10356445 6.00E-220 wgd
Cre05g0447 Cre-Chr5:4069326 Cre07g0529 Cre-Chr7:3139449 2.10E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0447 K01728 - csv:101218188 859.366