Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0447 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAACTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG | 1362 | 47.58 | MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGATEKLQSSSNSSMAVRLEEAEAEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4069326 | 4073984 | + | CrPI670011_05g004470.1 | Cre05g0447 | 496960 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0447 | 453 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 450 | IPR045032 | GO:0030570(InterPro) | |
Cre05g0447 | 453 | Pfam | Pectate lyase | 190 | 368 | IPR002022 | - | |
Cre05g0447 | 453 | Gene3D | - | 104 | 446 | IPR012334 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 127 | 144 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 424 | 447 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 187 | 203 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 251 | 272 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 395 | 419 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 353 | 372 | IPR018082 | - | |
Cre05g0447 | 453 | PRINTS | Pollen allergen Amb family signature | 151 | 176 | IPR018082 | - | |
Cre05g0447 | 453 | SMART | amb_all | 179 | 376 | IPR002022 | - | |
Cre05g0447 | 453 | FunFam | Pectate lyase | 104 | 446 | - | - | |
Cre05g0447 | 453 | Coils | Coil | 55 | 75 | - | - | |
Cre05g0447 | 453 | SUPERFAMILY | Pectin lyase-like | 81 | 448 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0447 | Cre-Chr5:4069326 | Cre05g2309 | Cre-Chr5:34642720 | 1.70E-153 | dispersed | |
Cre03g0634 | Cre-Chr3:5246066 | Cre05g0447 | Cre-Chr5:4069326 | 4.40E-177 | transposed | |
Cre08g1690 | Cre-Chr8:29305832 | Cre05g0447 | Cre-Chr5:4069326 | 6.20E-173 | transposed | |
Cre05g0447 | Cre-Chr5:4069326 | Cre06g1543 | Cre-Chr6:10356445 | 6.00E-220 | wgd | |
Cre05g0447 | Cre-Chr5:4069326 | Cre07g0529 | Cre-Chr7:3139449 | 2.10E-204 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0447 | K01728 | - | csv:101218188 | 859.366 |