Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0464 ATGGAAGAAGAAGTGAAGGTCCATGGAAGTTGGGCAAGTCCTTTCAGCTACAGAGTGATATGGGCTCTGCAACTCAAACGCATACCCTACCATTTTATTCAAGAAGACATGGCCAACAAAACCCCTTTGCTCCTTCATTACTATCCCGTCCACAAGAAGATTCCGGTGCTCGTCCATGCCGGAAACCCTATCTGCGAATCCGCCGTCATCCTCGAGTACATCGACGACACTTGGCCGGAAAAACCTCTGCTACCGTCCGATCCTTTCCACAGAGCCACCGCTCGCTTCTGGATCAAATTCATTGAGGATAAGGAAGCGACGATTAGGAGGATTTTTACGGCGGGAGAGGAAGAGAGAGAGGAGGCGAGGAAAGAAACCCTAGAAGTGCTGAGGACGATCGAGGAGCGGGGCCTCGGCAACGGGAAATTCTTCGGAGGAGAGGAGATTAATATGATTGATTTGGTGTATGGATGGATCGCCGTGTGGATGAAGGTTTTTGAAGAAGTTCTGGATATGAAACTTATGGAAGGACTTGAGTTCCCTCGCCTCCATGCTTGGGCGGAGAACTTCAAAGCCGCCGCCGTTATCAGAGATCATATTCCCGATCACCATCAAATGGTCCTCCATCTCCGCCGCCGCCGAGATTAA 648 50.46 MEEEVKVHGSWASPFSYRVIWALQLKRIPYHFIQEDMANKTPLLLHYYPVHKKIPVLVHAGNPICESAVILEYIDDTWPEKPLLPSDPFHRATARFWIKFIEDKEATIRRIFTAGEEEREEARKETLEVLRTIEERGLGNGKFFGGEEINMIDLVYGWIAVWMKVFEEVLDMKLMEGLEFPRLHAWAENFKAAAVIRDHIPDHHQMVLHLRRRRD 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4188674 4189392 + CrPI670011_05g004640.1 Cre05g0464 496977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0464 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cre05g0464 215 SUPERFAMILY Thioredoxin-like 5 103 IPR036249 -
Cre05g0464 215 CDD GST_C_Tau 88 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cre05g0464 215 FunFam Tau class glutathione S-transferase 84 215 - -
Cre05g0464 215 Gene3D Glutaredoxin 1 86 - -
Cre05g0464 215 SFLD Glutathione Transferase (cytosolic) 1 214 IPR040079 -
Cre05g0464 215 Gene3D - 87 215 - -
Cre05g0464 215 FunFam Tau class glutathione S-transferase 1 86 - -
Cre05g0464 215 SFLD Main.3: Omega- and Tau-like 1 214 IPR045073 -
Cre05g0464 215 Pfam Glutathione S-transferase, C-terminal domain 117 188 - -
Cre05g0464 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Cre05g0464 215 Pfam Glutathione S-transferase, N-terminal domain 12 76 IPR004045 -
Cre05g0464 215 SUPERFAMILY GST C-terminal domain-like 76 214 IPR036282 -
Cre05g0464 215 CDD GST_N_Tau 5 78 - -
Cre05g0464 215 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0464 K00799 - - csv:101207634 291.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0461 Cre-Chr5:4180869 Cre05g0464 Cre-Chr5:4188674 3.10E-76 dispersed
Cre05g0464 Cre-Chr5:4188674 Cre06g2315 Cre-Chr6:31098298 1.20E-45 dispersed
Cre05g0462 Cre-Chr5:4183722 Cre05g0464 Cre-Chr5:4188674 8.70E-87 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120