Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0470 ATGAGGAGAAATGGGAGAACTGATTCGTCTCTTTGCAGTCCTTTCGTCTTCCTCCTTTCTCTGAACTCCAAAAAAATGGACTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTTCTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTACCAATGGGCCTTTGCGATCGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTCGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGGGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCGGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTTGCCGCCATCACCGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATCTGCGGATTCGTCGCCGCTGTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGTTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGCCTCCTGATGGGCGGCGGCGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCACGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCAAAATCTGCAACTCCAACCGGAGATTATTGA 1578 55.58 MRRNGRTDSSLCSPFVFLLSLNSKKMDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAVVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4257517 4259094 - CrPI670011_05g004700.1 Cre05g0470 496983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0470 525 Gene3D Ammonium transporter AmtB like domains 50 515 IPR029020 -
Cre05g0470 525 NCBIfam ammonium transporter 72 496 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre05g0470 525 SUPERFAMILY Ammonium transporter 69 477 - -
Cre05g0470 525 PANTHER AMMONIUM TRANSPORTER 45 504 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cre05g0470 525 ProSitePatterns Ammonium transporters signature. 228 253 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre05g0470 525 Pfam Ammonium Transporter Family 75 496 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre05g0470 525 FunFam Ammonium transporter 53 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0470 Cre-Chr5:4257517 Cre06g1524 Cre-Chr6:9972519 2.60E-238 dispersed
Cre05g0470 Cre-Chr5:4257517 Cre07g0507 Cre-Chr7:2853303 6.20E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0470 K03320 - csv:101208366 912.524