Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0477 GAAAGGCAACGGCTTGAAAAGTTGCACTTTGGGAAAGGTAGAAAATATTCAAGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAGGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTTATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAATTTGCTAGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACCCTTAACTGGGAGATTTTACAGTTCAAAGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTCGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTAGAATACGCTGGTTTAAATCCTTTTGGAGGTCAGCGCATGGATAGTATTCCAAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACATGTAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCTTATGTCTTTGGGCTCGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTGGTTGGAATATCTCGATCTGCAAGGGGCTATTGCATAAGCCTTGTCATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAAGAAGCGCTGGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGCACTTGTCGCTGGGGTGAATTTGGTGAGGGTGGACGGCTATGGGGGGAATGTAATTCCAGACATTTTGAGTGGTTTGATGGAAATCCTCTTGATAATTTTTTGTATAAGGTTAAAGAGCTTTATGGTCTTGATGATAAAGTTACATTTAGGAATGTAACAATATCGTCAGAGAATAGGCCACATCCATTAACACTAGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATTAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCAGCCAAGCTTGTGAAATTATTGGAAATGAGGGAGGCCAATCATATTGAATTCTGTAGGATGAAGAATGTACTTGACGAAATATTACACATGCATAAAAATTGTGAGTTAAACAATATCCTGAAATTGTTGATGGATCCTGCATCCGTGGCAACTGGGTTGAAAATTGACTGTGATACATTCGTCAATGAATGTGAATGGGCTTCCAGTAGAGTTGACGAAATGATTTTTCTTGGTAGTGAAAGTGAAAGTGATCAGAAAATCAGTTCTTATCCTATCATTCCTAACGATTTTTTCGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGAATCGTGTACAGAAGTTGAAAGGGCAGCTGAAGCACTCTCCCTTGCAGTTACTGAAGATTTCGTCCCAATAATTTCAAGAATCAAGGCTACTACAGCACCACTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGAGAGCATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGATGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGGAAAAAGGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATGCTTTAGCAAGGTACCAAGAGGCCAATGCCAAAGCTAAAGCAAAAGTCGTGGATCTGCTGAGGCAACTTTCTTCTGAATTGCTAGCTAAAATTAACGTCCTAGTCTTTGCTTCCATGTTACTCATAATCGCCAGGGCGTTATTTGCTCACGTGAGTGAAGGGAGGAGGAGGAAATGGGTTTTTCCCACCCTTGTTGCACCCAGTGATAGGTCGAAGGGCATACAATCATTGGAGGGGAAAGTTGGGATGAAGCTGATTGGACTATCTCCCTATTGGTTTGATGCCGTGGAAGGCAATGCTGTGCAGAATAGTATTGAGATGGAATCGTTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCTAGTTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGGATATGTGGATTTATGGTACCAGCAGAGTCCGCCCTGATTCCCCACTTTGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGCAAAAGTTCGTTTCAGGTGGAAATGTCGGAGATGAGATCCATCATCAGTCGAGTAACAGAAAGAAGTCTTGTACTTATAGATGAAATCTGTCGCGGAACAGAGACAGCAAAAGGAACTTGTATTGCTGGGAGCATTATTGAAGCTCTTGATAAAGTAGGTTGTCTTGGTATTGTCTCCACTCACTTGCATGGAATATTCAATTTGCCTTTAGATACCAAAAACACTGTGTACAAAGCAATGGGAACCATTTGTGCTGATGGACGAACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGAATCTCTGAAGCTATAATTCAAAGGGCTGAAGATTTGTATCTCTCAAATTATGCTAAAGAAGGAATTTCAGGAAAAGAGAAGACAGATTTGAACTTTTCTGTTTCTTCTCATGCAAGCCTTAATGGCAATGGCAAATCCCATCACAAGTCAAATGGTGTTATAGTAGAAGCTGATAAGCCAAAAACAGAGACAGCTAGCAAAACAGGTGTCTTGTGGAAGAAAATTGAGGGGGCTATCACTGCAATATGCCAAAAGAAGTTGATAGAGTTCCACAAAGATAACAACACATTGGAACCTGCAGAAATTCAATATGTTCTAATTGATGCCAAAAAGAAGCCACCTCCATCAACAATAGGTGCTTCGAGCGTGTACGTGATTCTTAGACCGGATGGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCGTTCACATCGTTTGAAGGAAGGAATGCGGGATGCTGCATTTCTTTATTTTTTGGTCCCTGGTAAGAGCTTAGCTTGCCAACTCGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTCCAGCTAACTAATGTTGCTGATGGAAAGCACCGGAATTTCGGCACGTACAATCTCTTACCAGATAATGTGACTGTTTGTTCATAA 3333 42.06 ERQRLEKLHFGKGRKYSRGSIKAAKKFKDINNVQDDKFLSHILWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTCNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHFEWFDGNPLDNFLYKVKELYGLDDKVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYETATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPASVATGLKIDCDTFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNDFFEDMESSWKGRVKRIHIEESCTEVERAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYAREHQSVWFKGRRFAPAVWAGSPGEDEIKQLKPALDSKGKKVGEEWFTTKKVEDALARYQEANAKAKAKVVDLLRQLSSELLAKINVLVFASMLLIIARALFAHVSEGRRRKWVFPTLVAPSDRSKGIQSLEGKVGMKLIGLSPYWFDAVEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIISRVTERSLVLIDEICRGTETAKGTCIAGSIIEALDKVGCLGIVSTHLHGIFNLPLDTKNTVYKAMGTICADGRTVPTWKLISGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAKEGISGKEKTDLNFSVSSHASLNGNGKSHHKSNGVIVEADKPKTETASKTGVLWKKIEGAITAICQKKLIEFHKDNNTLEPAEIQYVLIDAKKKPPPSTIGASSVYVILRPDGKFYVGQTDDLEGRVRSHRLKEGMRDAAFLYFLVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTYNLLPDNVTVCS 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4314260 4329829 - CrPI670011_05g004770.1 Cre05g0477 496990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0477 1110 CDD ABC_MutS_homologs 715 898 - -
Cre05g0477 1110 Coils Coil 612 639 - -
Cre05g0477 1110 SUPERFAMILY DNA repair protein MutS, domain I 79 189 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 Pfam MutS domain I 92 181 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 Gene3D DNA repair protein MutS, domain I 80 185 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 FunFam DNA mismatch repair protein 699 979 - -
Cre05g0477 1110 Gene3D - 704 983 IPR027417 -
Cre05g0477 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 909 IPR027417 -
Cre05g0477 1110 SUPERFAMILY GIY-YIG endonuclease 1018 1081 IPR035901 -
Cre05g0477 1110 SMART mutATP5 725 911 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 Pfam MutS domain V 729 909 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 ProSitePatterns DNA mismatch repair proteins mutS family signature. 806 822 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0477 1110 PANTHER MUTL PROTEIN ISOFORM 1 4 1107 IPR053276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0477 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0477 Cre-Chr5:4314260 Cre11g0737 Cre-Chr11:4494817 3.30E-25 dispersed
Cre05g0477 Cre-Chr5:4314260 Cre09g0494 Cre-Chr9:4680218 3.30E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32