Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0480 ATGGCCGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCTCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGCGGAGGAGACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTCAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAAACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGCGGTCAATGTAG 855 48.77 MAAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVLFISAAVVQGEAAVTAGVEEGVAEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSQSLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQRSM 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4348559 4350906 - CrPI670011_05g004800.1 Cre05g0480 496993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0480 284 PANTHER OS02G0815200 PROTEIN 49 279 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cre05g0480 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 SMART rrm1_1 109 182 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 SMART rrm1_1 200 273 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 FunFam 28 kDa ribonucleoprotein, chloroplastic 190 281 - -
Cre05g0480 284 Pfam RNA recognition motif 201 271 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 Pfam RNA recognition motif 110 179 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723(InterPro)
Cre05g0480 284 SUPERFAMILY RNA-binding domain, RBD 192 281 IPR035979 GO:0003676(InterPro)
Cre05g0480 284 CDD RRM2_NsCP33_like 200 275 IPR048289 -
Cre05g0480 284 SUPERFAMILY RNA-binding domain, RBD 103 190 IPR035979 GO:0003676(InterPro)
Cre05g0480 284 Gene3D - 189 284 IPR012677 -
Cre05g0480 284 Gene3D - 74 188 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0480 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0480 Cre-Chr5:4348559 Cre10g1938 Cre-Chr10:34052736 2.50E-38 dispersed
Cre05g0480 Cre-Chr5:4348559 Cre06g2424 Cre-Chr6:32130837 1.30E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28