Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0501 ATGATAAATTGTATTCGCTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCGACTCGAGATTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAGGCCGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCACGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCGCAAAGCGATGTTGTGCCTACTATGTCGATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCAAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCATTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGATTGTAAATTACAAGAGACATTAACGAAGGCTGTTGACTTACTTCCAGAATTGTGGAAATCTGCGGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTACCAATGGAATTTGGGAATGGAAACCAGAGCAAAGATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCGTCAATAATAGAGCATCTCTCGTTTGCACTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCTGGAATTATAGCAAGAAAAGAAAAATACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAGGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAATAATATAGAGAACGTTGACTGCTTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGACATACACATTGAGAGTGCTGTCAGAGCTGCATGGTAAATGCCTCCATATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTTGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCGCTACAAACTGCTGAGCAACTGATGAAACAAAGAGATCCATTCATTGTTTACCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATTTTGCTCTATACTATGCAAAACAGCTAGTGAAACTTGAGGCCGGCTCTAGTATGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAACAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCCCAGGGCCAGCTAAAGAACGGTATAGAAACATACAGTCATCTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGGATATGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAATGGCGGGATGCTGAGATCTGTCTGTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGTCATGTTCCCAGCTTGATATCAACTGCCTGTCTTCTCCAACAGCTGGGCGGCAGTCAGTCATTTCCTGTGGTGAGAAGCTTGCTAACGGATGCCCTTCGACTAGATCGAGCAAATCCATTGGCATGGTACAGTCTCGGGCTGCTATATAAAGCTGACGCTGGGGCATCGGCACTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2133 41.96 MINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSFPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPEESILSYRRALLYQWNLGMETRAKIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIARKEKYCILALCYYGEGKGLVALNLLKNFLNNIENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCLHMASVANCLLGVLLSAMSKFVASDSQKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSMKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKDMRKSDRSLEVDTWHDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRANPLAWYSLGLLYKADAGASALEVAECFEAATLLEESAPVEPFR 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4473052 4476600 - CrPI670011_05g005010.1 Cre05g0501 497014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0501 710 Pfam Tetratricopeptide repeat 605 630 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SMART tpr_5 474 507 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SMART tpr_5 132 165 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SMART tpr_5 510 543 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SMART tpr_5 598 631 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SMART tpr_5 564 597 IPR019734 GO:0005515(InterPro)
Cre05g0501 710 SUPERFAMILY TPR-like 420 538 IPR011990 GO:0005515(InterPro)
Cre05g0501 710 PANTHER PROTEIN NPG1 2 710 IPR043376 -
Cre05g0501 710 Gene3D Tetratricopeptide repeat domain 554 705 IPR011990 GO:0005515(InterPro)
Cre05g0501 710 Gene3D Tetratricopeptide repeat domain 302 553 IPR011990 GO:0005515(InterPro)
Cre05g0501 710 SUPERFAMILY TPR-like 511 680 IPR011990 GO:0005515(InterPro)
Cre05g0501 710 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0501 Cre-Chr5:4473052 Cre11g2073 Cre-Chr11:32514084 1.10E-164 dispersed
Cre05g0501 Cre-Chr5:4473052 Cre07g0485 Cre-Chr7:2672830 8.50E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0501 K21843 - csv:101206105 1309.66