Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0515 ATGGAATGTTGTGACATCTCGAGCATTGGGCCCATCGTTAGGCCCAGTAATCCAATGGACAACTTTGACGGTGTCGTATGTGAATTTGCCCGTTCCGAAGCGAATTTAAGAATTGGATCGCGCCAGCGGCCAGACATTCACCTCGCGCAATTTCTCTGCTACTACTGCATATTCCCCAAATCGAACATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGGCCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGTTTCCATCTAATCTCTCTACTGTACCCTATTGTTCTCATCCTTTATTTCAAGAAAAGGTCCATCCCAGTCGTAGTCTGGAGAACGCTTCCATTTCCAGATGCCATGAACTTAATTTGATAGCTATGGATGCTGGATTTGGTTTGATTTTGGTTTGGCAAGATGGTGCCTTTCCTAATCCCAGACTCTTTGCCCATCAGTTCTCTGGTGTGAATCTACAAAATGGAAAGCAGATTCAAGTGAAAGCTACGGTTCATGTTCTGGAAAATGCAAGCACACATGCTCTCAGTCTGACAAAGATGGTTGAACGGTCGTCAATGAATATCGACATTCACACTATAGGGAATGTATATTCTGAGTTTTTTATTACGGAAGCTGTTCGTTTCTTCTGCCTGATTTCTGGCTTGAATGGAATTTGCGGTCATTGCCATCATCGCCCTGGAAGGTGTGGATCACAGGCAGCATTTCATGATTTGAATCCTTATAGGAATCGACGCCGCACCTGGATTGAGAACGGAATTGTCCGACGGGGAAACATTTTTGTGCCATTTGTGTATGGTGGGAAGTTTAAGCTTGGAAGGAAGATCGGCAGCGGATCATTTGGAGAACTTTATTTGGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTGAAGCTGGAATCTGCAAAGACCAAGCACCCTCAGCTTCACTATGAGTCAAAACTATACATGCTTCTTCAAGGAGGAACCGGTATCCCCCATCTCAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCCTGGAAGACTTGTTCAACTACTGCAATCGGAAACTGTCCTTGAAGTCGGTTTTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAATATATGCATTCACGGGGTTTCCTTCATCGTGACATAAAGCCGGACAATTTTCTAATGGGCTTGGGGCGAAAGGCTAATCAGGTGTACATCATTGACTATGGTCTTGCGAAGAAGTATAGAGATCTTCAGACACACAAGCATATACCATACAGAGAAAATAAGAATCTCACGGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGGAGGGACGATTTAGAATCACTGGGCTACGTGCTAATGTATTTTCTTAGGGGAAGCCTTCCTTGGCAGGGACTGAAGGCAGGGACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAGAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAGTCATATCCATCAGAATTTACATCCTACTTTCACTATTGTCGGTCGCTGAGGTTTGAAGATAAACCTGACTATTCATATCTGAAGAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTTGACTATGTATTTGACTGGACTATACTCAAATATCCACAGATTGGCTCCAGTTCAAAACCACGACCCAGTGGAAAACCAGGTCACACCCCAGGGCCATCAGCTGAAAGAGGGGAAAAGCATCCAGTGGGCCAAGATGTCCGAGATAGATTCTCTGGTGGAGCCGAGGCATTCGGAAGAAGGAACGCCAGTGGGCATTTGCATGGTGATCATTCCAGACACAGATCTGATGATGTACCATCTTCCAAGGATGTGCAACCTGATTCAGAACGGGGCCGCAGTAGTTATAGGAATGGAAGCATTTCGAAGAGGCCTGTTCTATCGAGCAGTCGACCAAGCTCCTCTGGGGAGCCAAGTGAAATCCGAACAAGTCGCCTGGTGTCAGCAAGTAGTCGTCTATCTGCAGGGCAAAGGGTTCAACCTGGTTTTGAGTCCAAAACGACAACTTTTACCCGTTCTTCAACTACAAAAGGTGGTCGTGATGATACACTCCGGAGCTTTGAGCTGTTGTCTATTGGAACTGGCAAGAGGAAATGA 2328 44.85 MECCDISSIGPIVRPSNPMDNFDGVVCEFARSEANLRIGSRQRPDIHLAQFLCYYCIFPKSNMQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQFPSNLSTVPYCSHPLFQEKVHPSRSLENASISRCHELNLIAMDAGFGLILVWQDGAFPNPRLFAHQFSGVNLQNGKQIQVKATVHVLENASTHALSLTKMVERSSMNIDIHTIGNVYSEFFITEAVRFFCLISGLNGICGHCHHRPGRCGSQAAFHDLNPYRNRRRTWIENGIVRRGNIFVPFVYGGKFKLGRKIGSGSFGELYLGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGHTPGPSAERGEKHPVGQDVRDRFSGGAEAFGRRNASGHLHGDHSRHRSDDVPSSKDVQPDSERGRSSYRNGSISKRPVLSSSRPSSSGEPSEIRTSRLVSASSRLSAGQRVQPGFESKTTTFTRSSTTKGGRDDTLRSFELLSIGTGKRK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4574974 4588917 - CrPI670011_05g005150.1 Cre05g0515 497028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0515 775 MobiDBLite consensus disorder prediction 613 759 - -
Cre05g0515 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0515 775 PANTHER CASEIN KINASE-RELATED 322 664 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Cre05g0515 775 ProSiteProfiles Protein kinase domain profile. 323 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0515 775 Gene3D Transferase(Phosphotransferase) domain 1 308 637 - -
Cre05g0515 775 Pfam Splicing factor 3B subunit 10 (SF3b10) 67 134 IPR009846 -
Cre05g0515 775 FunFam Casein kinase 1-like protein 315 643 - -
Cre05g0515 775 Pfam Protein kinase domain 324 542 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0515 775 SUPERFAMILY Protein kinase-like (PK-like) 319 604 IPR011009 -
Cre05g0515 775 SMART serkin_6 323 740 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0515 775 MobiDBLite consensus disorder prediction 689 754 - -
Cre05g0515 775 FunFam Putative Casein kinase I 316 399 - -
Cre05g0515 775 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524(InterPro)
Cre05g0515 775 MobiDBLite consensus disorder prediction 630 644 - -
Cre05g0515 775 CDD STKc_CK1_delta_epsilon 322 596 - -
Cre05g0515 775 MobiDBLite consensus disorder prediction 660 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0515 K08960 - - csv:101207063 897.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0515 Cre-Chr5:4574974 Cre11g0665 Cre-Chr11:3722539 6.00E-151 dispersed
Cre02g2681 Cre-Chr2:40032920 Cre05g0515 Cre-Chr5:4574974 1.20E-49 transposed
Cre04g0689 Cre-Chr4:24872515 Cre05g0515 Cre-Chr5:4574974 5.00E-51 transposed
Cre07g1749 Cre-Chr7:32969438 Cre05g0515 Cre-Chr5:4574974 1.70E-156 transposed
Cre08g1159 Cre-Chr8:24800427 Cre05g0515 Cre-Chr5:4574974 5.90E-53 transposed
Cre09g0012 Cre-Chr9:442389 Cre05g0515 Cre-Chr5:4574974 1.30E-51 transposed
Cre05g0515 Cre-Chr5:4574974 Cre06g1469 Cre-Chr6:9240329 7.90E-220 wgd
Cre05g0515 Cre-Chr5:4574974 Cre07g0479 Cre-Chr7:2608343 2.60E-202 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g723 . . . . . . . . . . . . Car06g01135 . . Cpe08g00337 Cpe03g01519 Bhi01g00722 . . . Hepe05g1661 . . . . . . . . . . . Cone7ag0328 Cone4ag0332 Lsi05g01737 . . Cme06g00484 . . . . . . . . . Cmo06g01327 . . . . . . . . . . . . . . Cla05g00440 Cam05g0478 Cec05g0488 Cco05g0488 . Cmu05g0453 Cre05g0515 . Csa03g01202 Chy06g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64116 PF00069 Pkinase 8.40E-26 CL0016 Cre PK