Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0520 ATGGCTACTGCATCAGTTGCTTTCAAATCTAGGGAGGATCATCGCAAACAACTAGAATTAGAGGAAGCACGCAAGGCAGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGGAAAGAAATCAACCCTCACATTCCTCAGTATATGTCCTCTGCACCTTGGTATCTTAACGCTGAGAGACCAAGTTTAAAACATCAAAGGAAATGGAAATCGGATCCGAATTATACAAAATCCTGGTATGACAGAGGTGCAAAAATACATCAGGCTGACAAGTATAGGAAGGGTGCATGTGAAAATTGTGGAGCAATGACACATGATGCAAAGGCATGCATGGAAAGGCCCCGAAAGGTAGGAGCCAAATGGACAAACATGCACATAGCGCCAGATGAAAAGATTGAGACATTTGAGCTAGATTATGATGGAAAAAGGGATCGTTGGAACGGTTATGATCCAGCAACCTATGCTCGTGTAATTGAGAGGTATGAGGCTAGAGATGAAGCAAGGAGAAAATTTTTGAAAGAACAACAACTTAAAAAATTGGAAGAGAAAAATAATAAGCAGAATGAGGATGTTGAAGTTAGTGATGAAGATGAGGATGAAGATGATTTGAAGGTTGATGAGGCAAAGGTTGATGAAAGCAAACAAATGGACTTTGCAAAAGTTGAGAAGCGTGTTCGGACGACAGGTGGTGGAAGCACGGGAACTGTTAGGAACTTGCGTATTCGGGAAGATACAGCCAAATATCTTTTAAATCTTGATGTCAACTCGGCTTATTATGATCCCAAAACTCGGTCCATGCGTGAGGATCCTCTTCCTGATGCTGATCCAAATGAGAAATTTTATGGAGGTGATAACCAGAATAGAATCAGCGGGCAAGCTTTGGATTTCAAGCAACTCAATGTGCATGCTTGGGAAGCATTTGATAAAGGTCAAGATATCCACCTGCAAGCTGCTCCATCTCAAGCTGAACTTCTGTATAAGAACTACAAGGTTATTAAAGAGAAATTGAAGTCACATACAAAGGATGCCATCATGGAGAAGTATGGGAATGCTGCTGCGGAGGAAAAGCTGCCTCGGGAACTTTTATTGGGACAGAGCGAGAGGCAAGTTGAATATGACCGTGCTGGCAGAATTGTTAAAGGCCTGGAGATGGCTCTTCCCAAAAGTAAATATGAGGAAGATGTTTTCATTAACAACCACACAAGCGTTTGGGGCTCATGGTGGAAGGATCACCAGTGGGGCTATAAATGCTGTAAACAAACCATTCGGAACAGTTATTGCACTGGGGCTGCTGGAATTGAGGCTGCTGAGGCAGCAGCAGACTTAATGAAGTCTAATATTGCTCGTAAAGCAACTTCTGAAGATACACCAGCCCCAGCTGAGGAGAAAAAGCTGGCTACTTGGGGAAGTGAAGTACCTGATGATCTTGTCCTTGACCAGAAGAAGCTTACTGAATCTCTTAAGAAGGAGGATGAAAGAAGGAAGGAGGAGAAGGACGAAAGAAAGCGTAAATATAATGTGAGATGGAACGATGAGGTAACTGCTGAGGACATGGAGGCATATAGGATGAAAAAGATAAGCGCAAAGCATATGGAGGCCTATCGATTGAAGAAGATACACTACGAAGATCCCATGAAGACTTTTGTGGACTAG 1650 43.03 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIHQADKYRKGACENCGAMTHDAKACMERPRKVGAKWTNMHIAPDEKIETFELDYDGKRDRWNGYDPATYARVIERYEARDEARRKFLKEQQLKKLEEKNNKQNEDVEVSDEDEDEDDLKVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYGGDNQNRISGQALDFKQLNVHAWEAFDKGQDIHLQAAPSQAELLYKNYKVIKEKLKSHTKDAIMEKYGNAAAEEKLPRELLLGQSERQVEYDRAGRIVKGLEMALPKSKYEEDVFINNHTSVWGSWWKDHQWGYKCCKQTIRNSYCTGAAGIEAAEAAADLMKSNIARKATSEDTPAPAEEKKLATWGSEVPDDLVLDQKKLTESLKKEDERRKEEKDERKRKYNVRWNDEVTAEDMEAYRMKKISAKHMEAYRLKKIHYEDPMKTFVD 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4608477 4614941 - CrPI670011_05g005200.1 Cre05g0520 497033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0520 549 PANTHER STEP II SPLICING FACTOR SLU7 8 522 IPR039974 GO:0000398(InterPro)|GO:0005681(PANTHER)|GO:0008380(PANTHER)|GO:0030628(InterPro)
Cre05g0520 549 Pfam Pre-mRNA splicing Prp18-interacting factor 136 405 IPR021715 -
Cre05g0520 549 Coils Coil 162 196 - -
Cre05g0520 549 MobiDBLite consensus disorder prediction 180 202 - -
Cre05g0520 549 MobiDBLite consensus disorder prediction 22 41 - -
Cre05g0520 549 Coils Coil 479 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0520 K12819 - - csv:101213744 974.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1924 Cre-Chr2:32579280 Cre05g0520 Cre-Chr5:4608477 4.00E-287 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g710 . . . . . . . . . . Cma06g01320 Cma14g01814 Car06g01138 Car14g01627 . Cpe08g00335 Cpe03g01518 . . . . . . . . . . . . . . . . . . Lsi05g01733 . . Cme06g00493 . . . . . . . . . Cmo06g01329 Cmo14g01853 . . . . . . . . . . . . . Cla05g00444 Cam05g0484 Cec05g0493 Cco05g0492 Clacu05g0479 . Cre05g0520 . Csa03g01209 Chy06g00472 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002897 2 1 1 2 2 2 1 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 1 55