Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0526 ATGGGGTCCCCGTCCGCGAGGACCAACTCAGAGCCTCGCTTTAGAAATCTTCTTCCTTACCTTTCGAACTCTGAGATGGAATCTTCTACCCTTAATAGAATAATTAATAGGTTGCTTGAACTCGGCAGCCGATCGGGGAAGCAGGTCCTGCTTTCTGAGGCTGAAATTACCCAGCTATGCTTGGCCTCCAGAGAAATCTTCTTAAGGCAACCAAATCTTTTGGAAATTGATGCACCAATCAATATCTGCGGGGATATCCATGGTCAGTATTCTGATCTTCTAAGGCTTCTCGAATTTGGTGGATTTCCTCCTCAGTCAAACTACTTGTTCTTGGGGGACTATGTAGATCGAGGAAAGCAGAGCGTAGAAACCATCTGCCTTCTCCTTGCATATAAAATAAAATATCCTGAAAACTTCTTCCTCTTGAGGGGCAACCATGAATGTGCATCTGTAAACCGTATCTACGGTTTTTATGACGAATGTAAACGTAGGTTTAATGTCAAACTGTGGAAAATATTCACCGACTGTTTCAACTGTTTACCCGTGGCTGCTCTAGTTGATGAAAAGATACTGTGTATGCATGGTGGGCTGTCTCCTCACCTTGACAGGTTAGATCAGATTAGGAATTTAAAGCGCCCTGCTGATGTTCCAGAATCAGGTTTACTCTGTGATCTCCTTTGGTCTGATCCAAGTGTAAATACACGTGGTTGGGGACCAAACGAACGAGGGGTTTCATACACCTTTGGTGCAGATCGAGTCATGGAGTTTCTTCGAAAACATGATCTTGATTTGATCTGTAGAGCTCACCAGGTCGTGGAGGACGGATACGAGTTTTTTGCAAATAGACAGCTTGTAACTTTGTTTTCGGCTCCAAACTACTGTGGAGAGTTTGACAATGCTGCTGCAATGATGCATGTGGATTCAAATTTAATGTGCTCTTTCCAAATACTAAAACCACCTGAAAAAAAGCCAAGGTTTGGGTTTGGCAGTATGTCATCGGGGCGATATGGCGGTCCGAAAAAAGTAAAGTCGTTTCTTGGCGCAATGGGCTGA 1053 43.87 MGSPSARTNSEPRFRNLLPYLSNSEMESSTLNRIINRLLELGSRSGKQVLLSEAEITQLCLASREIFLRQPNLLEIDAPINICGDIHGQYSDLLRLLEFGGFPPQSNYLFLGDYVDRGKQSVETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKLWKIFTDCFNCLPVAALVDEKILCMHGGLSPHLDRLDQIRNLKRPADVPESGLLCDLLWSDPSVNTRGWGPNERGVSYTFGADRVMEFLRKHDLDLICRAHQVVEDGYEFFANRQLVTLFSAPNYCGEFDNAAAMMHVDSNLMCSFQILKPPEKKPRFGFGSMSSGRYGGPKKVKSFLGAMG 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4671025 4673778 - CrPI670011_05g005260.1 Cre05g0526 497039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0526 350 SUPERFAMILY Metallo-dependent phosphatases 46 323 IPR029052 -
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 261 281 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 175 201 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 108 135 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 79 106 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 141 165 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 283 299 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PRINTS Serine/threonine phosphatase family signature 204 231 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 Pfam Calcineurin-like phosphoesterase 79 272 IPR004843 GO:0016787(InterPro)
Cre05g0526 350 Gene3D - 23 330 IPR029052 -
Cre05g0526 350 Pfam Serine-threonine protein phosphatase N-terminal domain 31 76 IPR031675 -
Cre05g0526 350 ProSitePatterns Serine/threonine specific protein phosphatases signature. 142 147 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 CDD MPP_PP1_PPKL 31 319 - -
Cre05g0526 350 SMART pp2a_7 51 321 IPR006186 GO:0016787(InterPro)
Cre05g0526 350 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 31 323 IPR050341 GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cre05g0526 350 FunFam Serine/threonine-protein phosphatase 23 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0526 K06269 - - csv:101209828 652.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0257 Cre-Chr1:1903699 Cre05g0526 Cre-Chr5:4671025 1.70E-58 dispersed
Cre05g0526 Cre-Chr5:4671025 Cre06g1742 Cre-Chr6:15860834 2.80E-156 dispersed
Cre05g0526 Cre-Chr5:4671025 Cre07g0712 Cre-Chr7:5103054 2.40E-144 transposed
Cre05g0526 Cre-Chr5:4671025 Cre11g1138 Cre-Chr11:8974863 2.40E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221