Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0527 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCTGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACGGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTGGCATTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 669 47.23 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4680056 4680724 - CrPI670011_05g005270.1 Cre05g0527 497040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0527 222 MobiDBLite consensus disorder prediction 63 84 - -
Cre05g0527 222 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Cre05g0527 222 MobiDBLite consensus disorder prediction 54 84 - -
Cre05g0527 222 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cre05g0527 222 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0527 222 PANTHER DNA-BINDING DOMAIN 56 182 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0527 Cre-Chr5:4680056 Cre06g1450 Cre-Chr6:8907229 3.80E-66 dispersed
Cre05g0527 Cre-Chr5:4680056 Cre05g0528 Cre-Chr5:4704629 6.10E-16 tandem
Cre05g0527 Cre-Chr5:4680056 Cre06g0938 Cre-Chr6:2771490 1.80E-15 wgd
Cre05g0527 Cre-Chr5:4680056 Cre06g1449 Cre-Chr6:8856471 2.00E-19 wgd
Cre05g0527 Cre-Chr5:4680056 Cre07g0463 Cre-Chr7:2396133 1.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53614 PF00847 AP2 2.50E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0527 K14516 - csv:101210326 347.436