Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0531 ATGAAGATCATGGTCGCCATCAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTGATGGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGACAATCTTATTAACACTTCGCTCGATCCTTTGTGGCCGCCTAATGATTCTAGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGAACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTGAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATTATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGCCGTTCCACCTCCAGGGCTTATCCCTGGTCATCTAGCAGCATATCATGCTACTCCAGGTGAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1464 47.27 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVMDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFVDGDNLINTSLDPLWPPNDSRDSCAETDVSAGRVESEENECSRKRARDGSCAEPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVAVPPPGLIPGHLAAYHATPGEMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 487
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 4731363 4738867 + CrPI670011_05g005310.1 Cre05g0531 497044
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0531 487 Pfam Helix-loop-helix DNA-binding domain 336 384 IPR011598 GO:0046983(InterPro)
Cre05g0531 487 Coils Coil 373 428 - -
Cre05g0531 487 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 403 IPR036638 GO:0046983(InterPro)
Cre05g0531 487 FunFam Electron transfer flavoprotein subunit beta 1 250 - -
Cre05g0531 487 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Cre05g0531 487 CDD bHLH_AtILR3_like 337 412 - -
Cre05g0531 487 SMART ETF_2 23 213 IPR014730 -
Cre05g0531 487 SMART finulus 338 389 IPR011598 GO:0046983(InterPro)
Cre05g0531 487 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Cre05g0531 487 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Cre05g0531 487 CDD ETF_beta 2 205 IPR033948 -
Cre05g0531 487 Gene3D HUPs 1 249 IPR014729 -
Cre05g0531 487 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 383 IPR011598 GO:0046983(InterPro)
Cre05g0531 487 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 249 IPR012255 GO:0005739(PANTHER)|GO:0009055(InterPro)|GO:0009055(PANTHER)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Cre05g0531 487 Gene3D - 335 416 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0531 Cre-Chr5:4731363 Cre05g1645 Cre-Chr5:27158309 4.70E-29 dispersed
Cre05g0531 Cre-Chr5:4731363 Cre10g0787 Cre-Chr10:7746780 2.90E-26 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53617 PF01012 ETF 3.70E-44 CL0039 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0531 K03521 - csv:101210570 473.781