Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0531 | ATGAAGATCATGGTCGCCATCAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTGATGGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGACAATCTTATTAACACTTCGCTCGATCCTTTGTGGCCGCCTAATGATTCTAGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGAACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTGAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATTATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGCCGTTCCACCTCCAGGGCTTATCCCTGGTCATCTAGCAGCATATCATGCTACTCCAGGTGAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG | 1464 | 47.27 | MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVMDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFVDGDNLINTSLDPLWPPNDSRDSCAETDVSAGRVESEENECSRKRARDGSCAEPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVAVPPPGLIPGHLAAYHATPGEMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4731363 | 4738867 | + | CrPI670011_05g005310.1 | Cre05g0531 | 497044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0531 | 487 | Pfam | Helix-loop-helix DNA-binding domain | 336 | 384 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0531 | 487 | Coils | Coil | 373 | 428 | - | - | |
Cre05g0531 | 487 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 335 | 403 | IPR036638 | GO:0046983(InterPro) | |
Cre05g0531 | 487 | FunFam | Electron transfer flavoprotein subunit beta | 1 | 250 | - | - | |
Cre05g0531 | 487 | Pfam | Electron transfer flavoprotein domain | 26 | 207 | IPR014730 | - | |
Cre05g0531 | 487 | CDD | bHLH_AtILR3_like | 337 | 412 | - | - | |
Cre05g0531 | 487 | SMART | ETF_2 | 23 | 213 | IPR014730 | - | |
Cre05g0531 | 487 | SMART | finulus | 338 | 389 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0531 | 487 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 1 | 244 | - | - | |
Cre05g0531 | 487 | ProSitePatterns | Electron transfer flavoprotein beta-subunit signature. | 157 | 177 | IPR000049 | GO:0009055(InterPro) | |
Cre05g0531 | 487 | CDD | ETF_beta | 2 | 205 | IPR033948 | - | |
Cre05g0531 | 487 | Gene3D | HUPs | 1 | 249 | IPR014729 | - | |
Cre05g0531 | 487 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 332 | 383 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0531 | 487 | PANTHER | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT | 1 | 249 | IPR012255 | GO:0005739(PANTHER)|GO:0009055(InterPro)|GO:0009055(PANTHER)|GO:0009063(PANTHER)|GO:0033539(PANTHER) | |
Cre05g0531 | 487 | Gene3D | - | 335 | 416 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0531 | Cre-Chr5:4731363 | Cre05g1645 | Cre-Chr5:27158309 | 4.70E-29 | dispersed | |
Cre05g0531 | Cre-Chr5:4731363 | Cre10g0787 | Cre-Chr10:7746780 | 2.90E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53617 | PF01012 | ETF | 3.70E-44 | CL0039 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0531 | K03521 | - | csv:101210570 | 473.781 |