Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0541 ATGGGCTTCTTCTCCTTCCTTGGACGCCTCCTCTTTGCCTCCATCTTCATCCTCTCCGCCTGGCAGATGTTTAATGAGTTTGGCAATAATGGCGGGCCAGCAGCCGCGGAATTGTCTTCAAAGGTAGCTGTTTTGAGGAGAAATTTATCATCCAAGCTGGGGGTAGCAATACCTGATATTGATGTCAGACACTTGGTTGCCATTTCTTTATCTCTTAAAGGGATTGGAGGCCTTCTGTTTGTTTTTGGCAGCAGAGTTGGAGCTTATCTCCTACTTCTGCAATTGGTTATTATCACCCCGGTTCTTTTTGATTTCTTCAACTATAGCCCTCAGAAACCTACTTTCGGTATCCCCTTACCTGAGTTCTTGCAGGATTACCTGAAATCAGTTGTACCTTCACAACTTATTTCCGAACGAGGTTCAAATTTGGTAGTGATAAACCCTGGATCTGCAAATGTTAGGATTGGCCTTGCATCGCAGGATGCTCCCTTTAATGTTCCTCATTGCATTGCTCGCTATACCGATCAAGTGCCCAAGAGAAATGTTCAAGATCAGATGCTTAATTCGCAAGTTACAACTGCACAGCACATGGAGCGGGAGAGGGCATATGATGTAATTGCCTCGTTGCTAAAAATACCGTTTCTGGATGAAGAGGTTGCTAACAGTTCTTTCCCGCGGAAGATGGGACGAGTTGATGGACATAATATGCATAATGGCAAGAAGGATAGTGTCTTTAGTTGGACTGACGTACATGAGAGGAACCCTACTTCGCCAATGGCAGTGGAAAGTTCAAGCTCCAAGGATGTGAACCATGAGCCTTTGGACCAGCACGTAGATACTGATTCCAAGGAGCTTAGTTCTAGTGTAATCAAATATAGACAGTTTATTTGCGGTGAGGATGCTCTTAAAATATCACCCAGTGAGCCATATTGCCTGCACCGTCCTATTCGCAGAGGTCACTTGAATATCTCACAGCATTACCCTACACAACAGGTACTTGAGGACTTGCATACTATTTGGGACTGGGTTTTGATAGAAAAATTGCATATCCCTCATAGTGAAAGAAACTTGTATTCTGCTATTCTGGTCGTCCCAGAAACATTTGACAACCGCGAAATAAAGGAGATGTTGACAATAGTATTGAGAGATTTGCGGTTTGGTTCAGCAGTGGTTCATCAGGAAGGGCTTGCTGCAGTTTTTGGGAATGGACTATCTTCAGCATGTGTTGTTAACATGGGAGCACAGGTGACAACAATTATTTGCATCGAGGATGGAGTTGCCCTGCCTGCCACAGCAAAGACTTTGCCATTTGGTGGAGAGGACTTATCTAGATGCCTCCTGTGGACTCAAAGGCATCACCAAACTTGGCCACCAATTCGTACAGACATCTTGTCGAAGCCTGTAGATCTTCTGATGCTTAATAGACTGAAAGAGTCATACTGTGAGATTAGAGAAGGAGAGGTCGATGCCGTTGCTGTAGTTCATTCATATGAAGAAGGCACCCCTGCTGGTTCTCATAAAACTAGACTGACTGCACTTAATGTACCACCTATGGGTTTGTTTTTCCCAATGCTATTGGTTCCGGATGTGTATCCACCACCACCCCGTGCATGGTTTCATGACTATGAGGATATGCTGGAAGAGACCTGGCAGACAGAGTACTCCAGAAGACCTGATGTACCAGATAATGTATATCCTGGCGTTAACGTTAATTTCCCAATGTGGGATAGCTACCCGGTTTATGCAACTAAACCAAAGAAAGAAGAGAAAGTTGGCCTTGCTGAAGCTATTGCAAGCAGTATCCTCTTAACAGGGCGAATTGACCTCCAGAGGAAACTGTTCTTAAGCATACAGTTAGTAGGTGGGGTGGCTTTGACAAGGGGTCTTATTCCTGCAATGGAGGAAAGAGTCTTGCATGCAATTCCTTCAAATGAAGCAATAGACACTGTTGAGGTGTTGCAATCAAGAACAAACCCTTCTTTTGTATCATGGAAAGGTGGAGCGATTATTGGAGTCCTTGACTTTGGGCGGGATGCTTGGATACATCGATTCTTACTATCTTCAAGCACAAGCGATGTGCTACATGAATTCCTAAAAGATAAGCTTTTCTAG 2112 44.22 MGFFSFLGRLLFASIFILSAWQMFNEFGNNGGPAAAELSSKVAVLRRNLSSKLGVAIPDIDVRHLVAISLSLKGIGGLLFVFGSRVGAYLLLLQLVIITPVLFDFFNYSPQKPTFGIPLPEFLQDYLKSVVPSQLISERGSNLVVINPGSANVRIGLASQDAPFNVPHCIARYTDQVPKRNVQDQMLNSQVTTAQHMERERAYDVIASLLKIPFLDEEVANSSFPRKMGRVDGHNMHNGKKDSVFSWTDVHERNPTSPMAVESSSSKDVNHEPLDQHVDTDSKELSSSVIKYRQFICGEDALKISPSEPYCLHRPIRRGHLNISQHYPTQQVLEDLHTIWDWVLIEKLHIPHSERNLYSAILVVPETFDNREIKEMLTIVLRDLRFGSAVVHQEGLAAVFGNGLSSACVVNMGAQVTTIICIEDGVALPATAKTLPFGGEDLSRCLLWTQRHHQTWPPIRTDILSKPVDLLMLNRLKESYCEIREGEVDAVAVVHSYEEGTPAGSHKTRLTALNVPPMGLFFPMLLVPDVYPPPPRAWFHDYEDMLEETWQTEYSRRPDVPDNVYPGVNVNFPMWDSYPVYATKPKKEEKVGLAEAIASSILLTGRIDLQRKLFLSIQLVGGVALTRGLIPAMEERVLHAIPSNEAIDTVEVLQSRTNPSFVSWKGGAIIGVLDFGRDAWIHRFLLSSSTSDVLHEFLKDKLF 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4797898 4813545 + CrPI670011_05g005410.1 Cre05g0541 497054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0541 703 Gene3D Actin; Chain A, domain 4 425 526 - -
Cre05g0541 703 SMART actin_3 141 699 IPR004000 -
Cre05g0541 703 SUPERFAMILY Actin-like ATPase domain 403 683 IPR043129 -
Cre05g0541 703 MobiDBLite consensus disorder prediction 253 280 - -
Cre05g0541 703 FunFam Actin-related protein 9 237 419 - -
Cre05g0541 703 Pfam Actin 143 682 IPR004000 -
Cre05g0541 703 MobiDBLite consensus disorder prediction 253 267 - -
Cre05g0541 703 Pfam HR-like lesion-inducing 1 125 IPR008637 -
Cre05g0541 703 PANTHER HR-LIKE LESION-INDUCER 1 125 - -
Cre05g0541 703 FunFam Actin-related protein 9 429 528 - -
Cre05g0541 703 SUPERFAMILY Actin-like ATPase domain 141 410 IPR043129 -
Cre05g0541 703 FunFam Actin-related protein 9 591 662 - -
Cre05g0541 703 Gene3D - 579 658 - -
Cre05g0541 703 Gene3D - 135 250 - -
Cre05g0541 703 Gene3D - 251 419 - -
Cre05g0541 703 FunFam Actin-related protein 9 135 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0541 K11673 - - csv:101213005 1102.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0541 Cre-Chr5:4797898 Cre06g1442 Cre-Chr6:8757796 6.90E-29 dispersed
Cre05g0541 Cre-Chr5:4797898 Cre06g1441 Cre-Chr6:8746565 1.60E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g649 . . . . . Bpe14g01242 . . . . . . Car06g01148 . . Cpe08g00323 Cpe03g01507 . . . . . . . . . . . . . . . . . . . . . Cme06g00511 Blo02g00729 . . Bda13g00075 . . Bma02g00795 . . . . . . . . . . . . . . . . . Cla05g00459 Cam05g0500 Cec05g0514 Cco05g0514 Clacu05g0501 Cmu05g0477 Cre05g0541 . Csa03g01232 Chy06g00485 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31