Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0548 ATGATGGGTTGGGTGGGATTGTCCGGGGTTGATCATCATCACCCGGCTGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGACGACGACGACGACGACAACAACCGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTATCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGCTCTACTGGCCTCACCGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTCGTTGGCTCGCTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCACCGCCCGAAATTAGAGCCACTGGAGGAGGGCAGATGCCGCCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGTGTTCAGCTTGGTCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 831 57.16 MMGWVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGGQMPPGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4844801 4846385 + CrPI670011_05g005480.1 Cre05g0548 497061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0548 276 PIRSF ESCAROLA 6 274 IPR014476 GO:0003680(InterPro)
Cre05g0548 276 Gene3D - 84 213 - -
Cre05g0548 276 MobiDBLite consensus disorder prediction 207 246 - -
Cre05g0548 276 ProSiteProfiles PPC domain profile profile. 81 222 IPR005175 -
Cre05g0548 276 MobiDBLite consensus disorder prediction 15 79 - -
Cre05g0548 276 FunFam AT-hook motif nuclear-localized protein 84 212 - -
Cre05g0548 276 CDD DUF296 85 167 IPR005175 -
Cre05g0548 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 209 - -
Cre05g0548 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 269 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre05g0548 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 197 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2493 Cre-Chr2:38194426 Cre05g0548 Cre-Chr5:4844801 1.10E-10 dispersed
Cre05g0548 Cre-Chr5:4844801 Cre07g0703 Cre-Chr7:4944381 3.40E-64 dispersed
Cre02g2008 Cre-Chr2:33535797 Cre05g0548 Cre-Chr5:4844801 1.70E-77 wgd
Cre05g0548 Cre-Chr5:4844801 Cre06g1437 Cre-Chr6:8708872 1.60E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0548 - - - 0.0