Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0548 | ATGATGGGTTGGGTGGGATTGTCCGGGGTTGATCATCATCACCCGGCTGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGACGACGACGACGACGACAACAACCGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTATCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGCTCTACTGGCCTCACCGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTCGTTGGCTCGCTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCACCGCCCGAAATTAGAGCCACTGGAGGAGGGCAGATGCCGCCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGTGTTCAGCTTGGTCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA | 831 | 57.16 | MMGWVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGGQMPPGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4844801 | 4846385 | + | CrPI670011_05g005480.1 | Cre05g0548 | 497061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0548 | 276 | PIRSF | ESCAROLA | 6 | 274 | IPR014476 | GO:0003680(InterPro) | |
Cre05g0548 | 276 | Gene3D | - | 84 | 213 | - | - | |
Cre05g0548 | 276 | MobiDBLite | consensus disorder prediction | 207 | 246 | - | - | |
Cre05g0548 | 276 | ProSiteProfiles | PPC domain profile profile. | 81 | 222 | IPR005175 | - | |
Cre05g0548 | 276 | MobiDBLite | consensus disorder prediction | 15 | 79 | - | - | |
Cre05g0548 | 276 | FunFam | AT-hook motif nuclear-localized protein | 84 | 212 | - | - | |
Cre05g0548 | 276 | CDD | DUF296 | 85 | 167 | IPR005175 | - | |
Cre05g0548 | 276 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 82 | 209 | - | - | |
Cre05g0548 | 276 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 31 | 269 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre05g0548 | 276 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 85 | 197 | IPR005175 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2493 | Cre-Chr2:38194426 | Cre05g0548 | Cre-Chr5:4844801 | 1.10E-10 | dispersed | |
Cre05g0548 | Cre-Chr5:4844801 | Cre07g0703 | Cre-Chr7:4944381 | 3.40E-64 | dispersed | |
Cre02g2008 | Cre-Chr2:33535797 | Cre05g0548 | Cre-Chr5:4844801 | 1.70E-77 | wgd | |
Cre05g0548 | Cre-Chr5:4844801 | Cre06g1437 | Cre-Chr6:8708872 | 1.60E-58 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0548 | - | - | - | 0.0 |