Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0571 ATGGCCACCGTGAAATTACCCACTGACAAGCTCATGGTTTGTTTGACTTGCCCTCTTTGCAATAACTTGTTCACTCATGCTACCACCATATCCGAATGCCTCCACACGTTTTGCAGGGTTTGTATCTATGAGAAGATAACTGAGGAGGAATTAGAGGGTTGTCCTGTCTGTAACACAAATTTAGGGGGTGTTCCTTTGGAGAAACTCAGGGCAGACCACACAATGGATGATTTGAGGGAGAAGATATTCCCTTGTAAAGGGAGGAAGGAGAAGGAACCTGAAACAACACACTCAGCCTCAGTTTCATCGCCAACAAAACGAAAAGAGAGATCACTCTCTTCTTTAGAGATAGATAATACATATACAACTCCTGACTCTGCAACAACGAAAATGCTGTCGAAATCTACAGCACAAGAGAACCTTGCTGAGCAACAATGCGTTTCCACCACGATTGTGCACAGTAAACCCATCTTTGATCAAAATAAGCAGAACAATACCCAAGTAATGGAAAGGAAAACTGTTGATTTGAATAAAAAAGAAGAAGCAACTGTAACGTCTTCAAATGATTGTAATATACAAGATAATACTATTGCCAAGGCAGAGACAATTCAGATTGATGATAACTATTGTAATGTTCAAGAACATGGTCACAAGCCAATAATGGAAAGAGTTGAAAGTGGATCTTATGGAACTACACCTTCTATTGAACATGGAAAATTGCAGGATGTTTCAAGGGAAAGAAGATTAGCTAGCAGCAATGGATCTTCTGGTAAATTGCAGGATCCTATAGGTGATATTGATGCAGATGGAGGATGCAATATGTTATCAAATCCTATATGGTTTGCACTAGTTGCTTCCAATCACCAGGAAGGAAATGAGCCTTTGCCTCAGATCTCCTCAAACTACTTGAGGGTCAGCGATGGCAGTATACCTGTGTTATTTATCCAGAAATATCTTGCGAAGAAACTGGGCCTTGCTAGTGAGATTGAGGTGGAAATCTCATTCAAGGGTCAGCCAGTGAGCTCCACATTGCATCTACATGATATCGTAGAACTGTGGCGACAGACAACCACCAAAGTAGAACTAATACAGATATCTGTGGGCAGCTCGGCCAAGGATTTTGTGATGGTTCTATCTTATGGTCGGAAGTGTTGTCACCCTGGAAAATTTCGGATATTTGTCCCAACTTAA 1191 41.14 MATVKLPTDKLMVCLTCPLCNNLFTHATTISECLHTFCRVCIYEKITEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKIFPCKGRKEKEPETTHSASVSSPTKRKERSLSSLEIDNTYTTPDSATTKMLSKSTAQENLAEQQCVSTTIVHSKPIFDQNKQNNTQVMERKTVDLNKKEEATVTSSNDCNIQDNTIAKAETIQIDDNYCNVQEHGHKPIMERVESGSYGTTPSIEHGKLQDVSRERRLASSNGSSGKLQDPIGDIDADGGCNMLSNPIWFALVASNHQEGNEPLPQISSNYLRVSDGSIPVLFIQKYLAKKLGLASEIEVEISFKGQPVSSTLHLHDIVELWRQTTTKVELIQISVGSSAKDFVMVLSYGRKCCHPGKFRIFVPT 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5032320 5034170 - CrPI670011_05g005710.1 Cre05g0571 497084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0571 396 SMART ring_2 17 57 IPR001841 -
Cre05g0571 396 Gene3D - 268 364 - -
Cre05g0571 396 SUPERFAMILY RING/U-box 14 81 - -
Cre05g0571 396 MobiDBLite consensus disorder prediction 85 136 - -
Cre05g0571 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 108 IPR013083 -
Cre05g0571 396 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 383 IPR044807 GO:0004842(InterPro)
Cre05g0571 396 MobiDBLite consensus disorder prediction 224 263 - -
Cre05g0571 396 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Cre05g0571 396 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Cre05g0571 396 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Cre05g0571 396 MobiDBLite consensus disorder prediction 115 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0571 K16277 - - csv:101216620 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1987 Cre-Chr2:33311962 Cre05g0571 Cre-Chr5:5032320 3.40E-66 wgd
Cre05g0571 Cre-Chr5:5032320 Cre07g0431 Cre-Chr7:1999281 2.50E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23