Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0579 ATGCATCCATTGGGAACACATTATAAAAACCTAATTTTCCAATGCCTCCATTGCAACTATAGTACGCTTCACTTCCAAGGCACTTTCAGCGCCGCCACTATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGAAAGTATCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGCGGCGAACTCTTCGCCAAAATCTCCCGCCGCGGGCGATTCACCGAACCCGTCGCCCGCCGGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCGCAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTCTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGGGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATTGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATATGTGA 1413 53.64 MHPLGTHYKNLIFQCLHCNYSTLHFQGTFSAATMETGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFAKISRRGRFTEPVARRYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLSGFLPFDDSNLAGMYKKIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKQSNESLLQPMRDYRLGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVEVRVVKGGEEFEELHWRCFEGKLEGFAVPWQRKCNM 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5119762 5121174 - CrPI670011_05g005790.1 Cre05g0579 497092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0579 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0579 470 SUPERFAMILY Protein kinase-like (PK-like) 54 336 IPR011009 -
Cre05g0579 470 CDD CIPK_C 347 451 - -
Cre05g0579 470 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0579 470 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524(InterPro)
Cre05g0579 470 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 52 399 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre05g0579 470 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Cre05g0579 470 FunFam Non-specific serine/threonine protein kinase 48 337 - -
Cre05g0579 470 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0579 470 FunFam Non-specific serine/threonine protein kinase 50 142 - -
Cre05g0579 470 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0579 470 ProSiteProfiles NAF domain profile. 341 365 IPR018451 GO:0007165(InterPro)
Cre05g0579 470 Gene3D Kinase associated domain 1, KA1 341 461 - -
Cre05g0579 470 Gene3D Transferase(Phosphotransferase) domain 1 143 335 - -
Cre05g0579 470 Pfam NAF domain 345 400 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0579 Cre-Chr5:5119762 Cre06g2099 Cre-Chr6:28784355 2.60E-93 dispersed
Cre04g0732 Cre-Chr4:25532686 Cre05g0579 Cre-Chr5:5119762 5.30E-07 transposed
Cre09g1073 Cre-Chr9:11082684 Cre05g0579 Cre-Chr5:5119762 3.60E-09 transposed
Cre05g0579 Cre-Chr5:5119762 Cre06g1409 Cre-Chr6:8345290 3.40E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64120 PF00069 Pkinase 1.20E-68 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0579 K12761 - csv:101217555 732.25