Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0597 ATGAATCGTCCTCGCCGAGTGAAGGAGGAGGTTCCGGCGTCGAGTTCATCAGCGCCGCCCCCCACGACGGCGTCTCCTCAGCCGATGGAAGGGCTTCACGAAGCGGGTCCACCGCCATTTCTGACAAAAACATATGAAATAATCGAAGATACAGGCACCAATCATATTGTTTCTTGGAGCAGAGGCAACAATAGCTTCGTGGTTTGGGATCCTCAATCTTTTTCCTTAACACTTCTTCCCAAATATTTCAAACATAGCAATTTCTCAAGCTTCGTCAGACAGCTGAATACCTATGGATTTAGGAAGGTGGATCCAGATAAGTGGGAATTTGCTCATGAAGGTTTCTTGAGAGGGCAGAAACATCTTCTGAAGCTGATTCGGAGGAGGAAAACGGCGCAACCAAACGCATCTCAGCAACCTCTGGACCCTTGTGTTGAGGTTGGACGGTTTGGGCTCGACGGAGAAGTCGATCGGCTGCAGCGTGATAAACAGGTATTAATGGCGGAGGTAGTGAAGTTAAGACAACAGCAACAAAACACAAAAACATACCTCCAAACAATGGAACGTCGGCTTAAAAGGACAGAGACAAGACAACAACTAATGATGAACTTCTTAGCAAGAGCAATTCAAAACCCTGATTTCATCCAACAATTAATCCACCAAAAAGACAAGCACAAAGAATTAGAAGAAGCCATCAATCGAAAGCGAAGACGACACATCGACCAAGGCCAAGCCGACTTTGAAGAAGAGGAAACACAAGATCATCTACCGCCGTTCGTGAACGACGACATTCAAATGGATGTCGACTTACTAGCCGTTGACGAACAACATCAAATGAATTATCATGTCCCTAAAGAAGAAACAATGGATGATAGTTGTGAGAGAGATGGTAATGATAATGATGATTTGAATGAAGGGTTTTGGGAGAATTTGTTGAATGAGGCCAATGAAGATCATTATGGATTTGGAACTCATGGCTTTGAGGAACAAGAGGATTTTAAGGATGAAGATCATGGGAATAATGAATTGGTTGACCACTTTGCCTTTTTCTCCTCAAATAATCTTAAATAA 1071 43.51 MNRPRRVKEEVPASSSSAPPPTTASPQPMEGLHEAGPPPFLTKTYEIIEDTGTNHIVSWSRGNNSFVVWDPQSFSLTLLPKYFKHSNFSSFVRQLNTYGFRKVDPDKWEFAHEGFLRGQKHLLKLIRRRKTAQPNASQQPLDPCVEVGRFGLDGEVDRLQRDKQVLMAEVVKLRQQQQNTKTYLQTMERRLKRTETRQQLMMNFLARAIQNPDFIQQLIHQKDKHKELEEAINRKRRRHIDQGQADFEEEETQDHLPPFVNDDIQMDVDLLAVDEQHQMNYHVPKEETMDDSCERDGNDNDDLNEGFWENLLNEANEDHYGFGTHGFEEQEDFKDEDHGNNELVDHFAFFSSNNLK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5302740 5305635 - CrPI670011_05g005970.1 Cre05g0597 497110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0597 356 FunFam Heat shock transcription factor 1 33 130 - -
Cre05g0597 356 MobiDBLite consensus disorder prediction 1 36 - -
Cre05g0597 356 Pfam HSF-type DNA-binding 40 129 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0597 356 Gene3D - 32 130 IPR036388 -
Cre05g0597 356 SMART hsfneu3 36 129 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0597 356 Coils Coil 218 238 - -
Cre05g0597 356 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0597 356 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 332 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Cre05g0597 356 SUPERFAMILY Winged helix DNA-binding domain 36 129 IPR036390 -
Cre05g0597 356 Coils Coil 156 176 - -
Cre05g0597 356 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0597 356 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0597 356 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0597 K09419 - - csv:101218269 624.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0597 Cre-Chr5:5302740 Cre08g1648 Cre-Chr8:28988173 2.30E-65 dispersed
Cre07g0928 Cre-Chr7:8966675 Cre05g0597 Cre-Chr5:5302740 3.40E-44 transposed
Cre10g0400 Cre-Chr10:2841037 Cre05g0597 Cre-Chr5:5302740 1.80E-63 transposed
Cre11g0666 Cre-Chr11:3731737 Cre05g0597 Cre-Chr5:5302740 7.10E-48 transposed
Cre05g0597 Cre-Chr5:5302740 Cre07g0420 Cre-Chr7:1889054 4.00E-78 wgd
Cre05g0597 Cre-Chr5:5302740 Cre09g0695 Cre-Chr9:6667133 2.30E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g557 . . . Bda08g00255 . . . Bma05g01091 . . Cma06g01370 . Car06g01187 Car14g01574 Sed02g1342 . Cpe03g01464 Bhi01g00760 Tan10g0791 Cmetu06g1701 . Hepe05g1586 . Lcy11g1582 . . . . . . . . . . . Lsi05g01637 . . Cme06g00575 . . . . Bpe05g00882 . . . . . . . . . . . . . . . . . . . Cla05g00509 Cam05g0560 Cec05g0572 Cco05g0570 Clacu05g0557 Cmu05g0528 Cre05g0597 . Csa03g01291 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
Cre05g0597 . 37 237 HSF AT4G17750 59.6 1.9e-62 237.3
Cre09g0695 . 57 297 HSF AT4G17750 51.4 1.8e-60 230.7
Cre08g1648 . 42 242 HSF AT4G17750 55.0 1.7e-58 224.2
Cre03g0980 . 13 192 HSF AT4G17750 50.8 7.0e-44 175.6
Cre08g1547 . 14 118 HSF AT4G17750 69.5 3.9e-39 159.8
Cre09g2219 . 368 490 HSF AT4G17750 61.8 3.9e-39 159.8
Cre05g2189 . 20 118 HSF AT4G17750 69.7 2.6e-38 157.1
Cre05g0597 . 38 242 HSF AT5G16820 57.0 5.1e-60 229.2
Cre07g0420 . 41 258 HSF AT5G16820 52.2 9.7e-59 224.9
Cre09g0695 . 58 269 HSF AT5G16820 54.2 2.4e-57 220.3
Cre08g1648 . 43 253 HSF AT5G16820 51.1 3.8e-55 213.0
Cre04g2010 . 40 222 HSF AT5G16820 50.3 5.7e-43 172.6
Cre06g1660 . 10 176 HSF AT5G16820 51.6 6.3e-42 169.1
Cre10g0400 . 13 515 HSF AT1G32330 53.0 3.1e-121 432.6
Cre05g0597 . 26 227 HSF AT1G32330 54.0 1.1e-59 228.0
Cre09g0695 . 46 265 HSF AT1G32330 51.8 6.3e-58 222.2
Cre08g1648 . 31 223 HSF AT1G32330 54.6 3.8e-55 213.0
Cre08g1547 . 20 117 HSF AT1G32330 72.4 3.3e-38 156.8
Cre07g0420 . 41 262 HSF AT3G02990 52.2 9.1e-62 235.0
Cre05g0597 . 38 241 HSF AT3G02990 57.6 2.7e-61 233.4
Cre09g0695 . 58 280 HSF AT3G02990 52.2 1.2e-58 224.6
Cre08g1648 . 43 242 HSF AT3G02990 51.7 4.9e-55 212.6
Cre06g1660 . 10 172 HSF AT3G02990 50.3 4.0e-41 166.4
Cre05g0597 . 25 298 HSF AT2G26150 50.5 3.3e-69 259.2
Cre09g0695 . 46 264 HSF AT2G26150 54.5 2.5e-64 243.0
Cre10g0400 . 8 243 HSF AT2G26150 55.7 3.3e-61 232.6
Cre03g0980 . 5 156 HSF AT2G26150 52.0 1.1e-40 164.5
Cre02g2132 . 2 189 HSF AT4G18880 52.7 9.6e-52 201.4
Cre05g0397 . 6 353 HSF AT4G13980 56.9 1.6e-103 373.6
Cre05g0597 . 26 218 HSF AT5G43840 54.4 1.7e-55 213.4
Cre08g1648 . 31 234 HSF AT5G43840 50.5 1.2e-45 180.6
Cre09g0695 . 46 382 HSF AT3G22830 53.5 4.3e-92 335.5
Cre07g0420 . 16 350 HSF AT3G22830 50.9 2.1e-86 316.6
Cre08g1648 . 31 253 HSF AT3G22830 54.1 1.7e-64 243.8
Cre10g0400 . 29 242 HSF AT3G22830 58.9 1.2e-62 237.7
Cre09g0695 . 45 357 HSF AT3G51910 51.3 1.6e-71 266.5
Cre07g0420 . 26 322 HSF AT3G51910 52.5 2.0e-69 259.6
Cre08g1648 . 31 223 HSF AT3G51910 56.0 4.1e-54 208.8
Cre08g1648 . 31 230 HSF AT3G63350 52.5 2.8e-50 196.1
Cre02g2132 . 5 140 HSF AT3G63350 56.6 5.5e-38 155.2
Cre09g0695 . 59 251 HSF AT1G67970 50.3 4.0e-44 176.0
Cre04g1306 . 2 296 HSF AT4G36990 52.0 2.2e-71 266.2
Cre08g1547 . 17 115 HSF AT5G62020 67.7 2.0e-38 156.8
Cre09g2219 . 391 712 HSF AT4G11660 51.8 2.3e-79 293.1
Cre08g1547 . 16 121 HSF AT4G11660 71.7 4.1e-44 176.0
Cre04g1306 . 2 107 HSF AT4G11660 71.7 3.8e-42 169.5
Cre03g1504 . 20 119 HSF AT4G11660 68.0 1.1e-38 157.9
Cre10g0400 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cre04g0452 . 30 237 HSF AT2G41690 53.7 1.6e-49 193.4
Cre10g1708 . 14 222 HSF AT2G41690 55.3 1.1e-47 187.2
Cre08g1547 . 9 373 HSF AT1G46264 52.2 8.5e-89 324.3
Cre05g2189 . 1 238 HSF AT1G46264 63.8 2.2e-81 299.7
Cre03g1504 . 19 200 HSF AT1G46264 51.9 3.2e-51 199.5
Cre10g0400 . 33 138 HSF AT1G46264 73.6 3.9e-41 166.0
Cre10g1708 . 21 118 HSF AT1G46264 69.4 5.8e-37 152.1
Cre02g2132 . 5 105 HSF AT1G46264 67.3 7.6e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011933 1 1 0 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53624 PF00447 HSF_DNA-bind 4.10E-32 CL0123 Cre TF