Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0603 ATGAATACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCACCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCTCTCAAATTCCTCGATATACGATTCAACAGATTCCATGGCTATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGACTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAACAATCTCACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCGTTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCACCGCCGCCTCCGCCGCCATCTTATTGGTGA 1137 51.1 MNTLSSPLSKSLFLISTLILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNRFHGYLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLNNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPPPPSYW 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5374679 5375815 + CrPI670011_05g006030.1 Cre05g0603 497116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0603 378 Gene3D Ribonuclease Inhibitor 207 334 IPR032675 -
Cre05g0603 378 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 372 IPR051582 -
Cre05g0603 378 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cre05g0603 378 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
Cre05g0603 378 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Cre05g0603 378 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 227 319 - -
Cre05g0603 378 SUPERFAMILY L domain-like 44 325 - -
Cre05g0603 378 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Cre05g0603 378 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1869 Cre-Chr3:35623894 Cre05g0603 Cre-Chr5:5374679 1.90E-26 dispersed
Cre05g0603 Cre-Chr5:5374679 Cre07g0603 Cre-Chr7:3860520 1.30E-45 dispersed
Cre05g0603 Cre-Chr5:5374679 Cre06g1872 Cre-Chr6:25183274 5.30E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0603 - - - 0.0