Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g0607 | ATGATAGCGCCGATGGCACTTCAGTCTAGAATTCCTTGTATTCGAGGTGTACTATTTGAGTTATCTGTGTTGATCTTAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGTTCCCAAAGGAGACACAGAGCCAGGATAGAACTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTAGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTCGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAAAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGAAATTTGCCCTCATATTGTCACTACTGCAGTTACCAATCTGTCTTTTTAAAATTGCTCCGAGTAGTAGTAATTCGTTTGTTCAAAACAAAGCGGATAGCCGCACAGTGCAACAAACGACTCCATTAATGGCGGCAAATCTTCATCCAACTATCTCCATCGCGCCAAATTTCATCACACCCACCACTCAGAATGACTCAAAGCATACCCCTACCCACCATTTTCAAATTGGGTTGTTCAAAAATTGCAAAACCATGGATGAACTTGGACAATTACACTGTTACGCGTTAAAGCAGGGTCTCATTCGCAAACGATCGACTTTAACTAAGCTTATTTCCACTTGCGTGGAAATGGGCACTTCAGAAAGCTTGGATTATGCTCGAAAGGCCTTCGAGCTCGTCCATGAAGACGGGGAAGCAAATGCCACTCTTTTCATGTACAATTCGTTAATCAGGGGATACTCTGCTGCAGGGTTTTGCGATGAAGCTATTTCGCTGTATGTTCAGATGATCGAGGTTGGGTTTATGCCAGACAACTTCACGTTTCCATTTTTGTTAAGTGCGTGTGCTAAGACTGGAGCGTTTGTAGAAGGGGTTCAGCTCCATGGAGCTCTGATGAAGATTGGTTTAGAGAGAGATATGTTTGTTGCTAATTCTCTGATACATTTGTATGCGGAAGGGGGAGAATTTTTGTTTGCTCGAAAGGTGTTTGATGAAATGCTTGAGAGAAATGTTGTTTCATGGACCAGCTTGATTTGTGGCTATGCTAGGACAGATGCTTCTAGAGAGGCTGTGGCTTTGTTTTTCCAAATGATCGAGGCAGGTGTTAGACCCAATTCTGTCACAATGGTGTGTGTGATATCGGCTTGTGCCAAGTTGAAAGTTCTTGAACTAGCCAAGAGAATTCATGCTTACATTGAAGAATCAGAAATGGAGATTAATACTCATATGGTGAATGCACTTGTGGATATGTACATGAAATGTGGAGAAACTGGATCTGCAAAGCGACTATATGATGGATGTGTTGATAAGAATTTGGTTTTGTGTAACACAATCATGTCAAATTTTGCACGCCATGGTATGGCGAAGGAGGTACTTGCTGTCTTAGCAGATATGTTCAGAGTAGATCTTCAACCGGATAGAGTTTCGTTGTTATCAGCAATCTCGGCATGTGGGCAGATGGGTGACTATCTACTTGGGACGTGCTGCCACAATTATTGTCTAAGAAATGGGTATGAAGGTTGGGATAACATTTGCAATGCAATTATTGACATGTACATGAAGTGTGGAAGAAAAGAAATGGCCTTCAGAGTTTTTGACAGCATGTCAAATAAGACCATTGTGTCGTGGAACTCATTACTTGTTGGTTACATTAGAAACAAAGATTTTGAGTCAGCTAGGAAGATATTCAATGAGACGCCTGTAAAGGATATAGTGTCTTGGAACACAATGGTTAATGCTTTGGTTCAAGAGAGTATGTTCGGTGAAGCAATTGAACTTTTTCGAGAAATGCAATTGAAGGAAATGAAAGCAGATAGGGTGACAATGGTAGAAGTTGCATCAGCATGTGGATATCTCGGAGCTCTGGAACTTGCCAAGTGGATATATGCCTATATTGTAAAGAACAACATCTACTGTGATATGTTGCTTGAGACAGCATTAGTTGATATGTTTGCTAGGTGCGGTGACCCTCATAATGCGATGGAAGTGTTCAACAATATGGATAGAAAAGATGTATTGGCATGGACAGCAGCCATTGGAGCAATGGCTGTGGATGGGAATGGCAAACGAGCTTTTGAACTTTACAATGAGATGCTAAGGCAAGGGGTGAAACCAGATCAAGTAGTTTTTGTAAACATATTAACAGCTTGCAGCCATGGTGGTTTCGTGGAACAAGGGCAGCACATATTTGAGTCAATGAAGCAACATGGAATCTCTCCACAGATTGTTCATTATGGTTGCATGGTTGATCTATTAGGTCGTGCAGGTAAGTTGGAAGAAGCTCTAGATATTATAAAGAGCATGCCAATGAAACCCAATGGGATTATATGGGGATCTCTATTGGCTGCATGTCGTATCCATAAAAACATCGATATGGCGACATTTGCAGCTGAAAGGTTAGCAGAAGTGGCTCCAGAAAGGACTGGGATTCACGTGCTTCTATCAAACATATATGCTTCAGCTGAAAAGTGGGCTGATGTTGCTAATGTGAGGCTACAGTTGAAGGAAAAAGGAGTTCAGAAAATGCCTGGTTCGAGCTCGATAGAAGTTGATGGAGTTATTCATGAGTTTACCTCAGGTGACAGATCACACCCAGAAAACTGTGGCATTGACATGATGTTAAAGGAAATTACCAACAGGCTTGGGGATGTTGGTTATGTTCCTGATGTAACCAATGTTCTTCTTGACGTAAATGAGCAGGAGAAACAATATCTACTCAATCGGCATAGCGAGAAGCTGGCAATGGCTTACGGGCTTATAAGCACAGAAAAGCATTTACCAATTCGTGTTATAAAGAATCTCCGAATGTGCTCAGACTGTCATGCATTCGCCAAATACATTTCAAAAGTGTATGTTAGGGAAATAACAGTACGAGATAATAACAGGTTTCACTTCTTTCGACAAGGGTCTTGTTCATGTGGTGATTATTGGTAA | 3882 | 42.12 | MIAPMALQSRIPCIRGVLFELSVLILAMNSKGNDMGGSPFPKETQSQDRTLNSKVAGMGSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSKGGGMISPDDTSCLCFRPFGKKFALILSLLQLPICLFKIAPSSSNSFVQNKADSRTVQQTTPLMAANLHPTISIAPNFITPTTQNDSKHTPTHHFQIGLFKNCKTMDELGQLHCYALKQGLIRKRSTLTKLISTCVEMGTSESLDYARKAFELVHEDGEANATLFMYNSLIRGYSAAGFCDEAISLYVQMIEVGFMPDNFTFPFLLSACAKTGAFVEGVQLHGALMKIGLERDMFVANSLIHLYAEGGEFLFARKVFDEMLERNVVSWTSLICGYARTDASREAVALFFQMIEAGVRPNSVTMVCVISACAKLKVLELAKRIHAYIEESEMEINTHMVNALVDMYMKCGETGSAKRLYDGCVDKNLVLCNTIMSNFARHGMAKEVLAVLADMFRVDLQPDRVSLLSAISACGQMGDYLLGTCCHNYCLRNGYEGWDNICNAIIDMYMKCGRKEMAFRVFDSMSNKTIVSWNSLLVGYIRNKDFESARKIFNETPVKDIVSWNTMVNALVQESMFGEAIELFREMQLKEMKADRVTMVEVASACGYLGALELAKWIYAYIVKNNIYCDMLLETALVDMFARCGDPHNAMEVFNNMDRKDVLAWTAAIGAMAVDGNGKRAFELYNEMLRQGVKPDQVVFVNILTACSHGGFVEQGQHIFESMKQHGISPQIVHYGCMVDLLGRAGKLEEALDIIKSMPMKPNGIIWGSLLAACRIHKNIDMATFAAERLAEVAPERTGIHVLLSNIYASAEKWADVANVRLQLKEKGVQKMPGSSSIEVDGVIHEFTSGDRSHPENCGIDMMLKEITNRLGDVGYVPDVTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKHLPIRVIKNLRMCSDCHAFAKYISKVYVREITVRDNNRFHFFRQGSCSCGDYW | 1293 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5423583 | 5430674 | + | CrPI670011_05g006070.1 | Cre05g0607 | 497120 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g0607 | 1293 | SUPERFAMILY | Protein kinase-like (PK-like) | 90 | 383 | IPR011009 | - | |
| Cre05g0607 | 1293 | Gene3D | Tetratricopeptide repeat domain | 705 | 818 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 653 | 687 | IPR002885 | - | |
| Cre05g0607 | 1293 | ProSiteProfiles | Protein kinase domain profile. | 110 | 386 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | FunFam | Kinase suppressor of Ras 1 | 99 | 193 | - | - | |
| Cre05g0607 | 1293 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 250 | 262 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | SMART | serkin_6 | 110 | 386 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 552 | 586 | IPR002885 | - | |
| Cre05g0607 | 1293 | Gene3D | Phosphorylase Kinase; domain 1 | 100 | 192 | - | - | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 886 | 920 | IPR002885 | - | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 622 | 652 | IPR002885 | - | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 987 | 1021 | IPR002885 | - | |
| Cre05g0607 | 1293 | Gene3D | Tetratricopeptide repeat domain | 959 | 1191 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g0607 | 1293 | Gene3D | Tetratricopeptide repeat domain | 481 | 602 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g0607 | 1293 | FunFam | Pentatricopeptide repeat-containing protein At3g22690 | 818 | 940 | - | - | |
| Cre05g0607 | 1293 | Gene3D | Transferase(Phosphotransferase) domain 1 | 209 | 395 | - | - | |
| Cre05g0607 | 1293 | FunFam | Pentatricopeptide repeat-containing protein | 554 | 706 | - | - | |
| Cre05g0607 | 1293 | CDD | STKc_MAP3K-like | 116 | 383 | - | - | |
| Cre05g0607 | 1293 | FunFam | Pentatricopeptide repeat-containing protein mitochondrial | 941 | 1049 | - | - | |
| Cre05g0607 | 1293 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 785 | 881 | IPR050421 | - | |
| Cre05g0607 | 1293 | PRINTS | Tyrosine kinase catalytic domain signature | 244 | 262 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | PRINTS | Tyrosine kinase catalytic domain signature | 354 | 376 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | PRINTS | Tyrosine kinase catalytic domain signature | 310 | 332 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | PRINTS | Tyrosine kinase catalytic domain signature | 206 | 219 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | Pfam | E motif | 1103 | 1165 | IPR046848 | - | |
| Cre05g0607 | 1293 | FunFam | Pentatricopeptide (PPR) repeat-containing protein | 1050 | 1212 | - | - | |
| Cre05g0607 | 1293 | FunFam | Pentatricopeptide repeat-containing protein At5g39350 family | 707 | 817 | - | - | |
| Cre05g0607 | 1293 | Pfam | DYW family of nucleic acid deaminases | 1201 | 1293 | IPR032867 | GO:0008270(InterPro) | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 754 | 788 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat family | 554 | 600 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat family | 652 | 701 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat family | 986 | 1034 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat family | 885 | 925 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 627 | 655 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 756 | 789 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 1060 | 1084 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 990 | 1022 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 827 | 853 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 555 | 587 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 888 | 921 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 655 | 688 | IPR002885 | - | |
| Cre05g0607 | 1293 | NCBIfam | pentatricopeptide repeat | 857 | 881 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | Protein tyrosine and serine/threonine kinase | 111 | 383 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cre05g0607 | 1293 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1022 | 1056 | IPR002885 | - | |
| Cre05g0607 | 1293 | Gene3D | Tetratricopeptide repeat domain | 606 | 704 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g0607 | 1293 | Gene3D | Tetratricopeptide repeat domain | 819 | 935 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g0607 | 1293 | Pfam | PPR repeat | 1059 | 1085 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat | 857 | 881 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat | 756 | 783 | IPR002885 | - | |
| Cre05g0607 | 1293 | Pfam | PPR repeat | 828 | 853 | IPR002885 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g0607 | Cre-Chr5:5423583 | Cre11g1730 | Cre-Chr11:28913484 | 1.20E-151 | dispersed | |
| Cre11g1556 | Cre-Chr11:25129522 | Cre05g0607 | Cre-Chr5:5423583 | 2.40E-60 | dispersed | |
| Cre11g0757 | Cre-Chr11:4778920 | Cre05g0607 | Cre-Chr5:5423583 | 2.90E-25 | transposed | |
| Cre05g0607 | Cre-Chr5:5423583 | Cre09g0687 | Cre-Chr9:6542981 | 3.40E-159 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 64122 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-59 | CL0016 | Cre | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g0607 | - | - | - | 0.0 |