Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0651 ATGAGAATTTCTTTTTCCTTCTATCATCATCTCTACTACGCGCAGTACACAGCCTCCATACATCTCCACCAGGCGGCTAGATTTAGAGCACGTTTGATAATGGACTCTGTAGCCAAGAATTCAGAACGTAGGCCAATTTCTATTAAGTTGTGGCCTCCTAGTGAAAATACTCGGAAAATGCTTGTGGAGCGGATGACAAATAACCTTACCAGCAAATCCTTTTTCACCCAAAAATATGGTACTCTTAGTCAGGAAGAGGCTACAGATGAGTCAAAGAGAATTGAAGATATTGCTTTTGAGACGGCTAATCAGAATTATGAAAAACAGCCAGATGGTGATGGGGGTGCTGCTGTACAACTTTATGCCAAGGAATGCAGCAGGCTTCTTCTTGAGGTTCTTAAGAGAGGTCCTAAAGTTGAGGCAGACAAGGAGGCTGGATCTGATATCACTAGTGCTCCTCCTGAAATCTGTTTCGACATCTCAAAAGGTCGACGAGCCTTTATCGTGGCAGAGGAAGCTGAAGAACTTCTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCAAGATATGTTTCAGCAACCGAAGCTTTGGTTTAGAAGCAGCTCGTGTGACTGAGCCCATTCTTGTGTCCCTCAAGGATCAATTAAAAGAAGTGGATCTCTCTGATTTTATTGCAGGAAGACCAGAGTCAGAAGCTCTAGAGGTCATGAAATTGTTCTCTGATGCTTTAGAAGGCAGCATCTTGAGATCCTTGAACCTCTCAAACAATGCCTTAGGTGAGAAGGGTGTGAGAGCTTTTGGCTCTCTCCTGAAATCACAGTCTTGTTTAGAGGAGCTATATTTGATGAATGATGGAATTTCCAAGGAAGCTGCTCAGGCAGTATCTGAGTTGATTCCTTCAACAGATAAGCTTAAGATCCTTCATTTTCATAATAACATGACAGGCGATGAAGGTGCTTTTGCTATTGCCGAAGTCGTAAAGCGTTCTCCTCTATTGGAAGATTTTCGTTGCTCCTCTACAAGGATAGACTCTGAGGGGGGCGTTGCCTTATCTTCAGCACTCGGGACTTGTACCAGATTGAAGAAACTCGACCTTCGAGACAACATGTTTGGAGTGGAAGGTGGAGTTGCTCTGAGTAAAGCCCTTTCACATCATGCAGATCTCAAGGAGCTGTATTTGAGTTACCTGAACTTGGAAGATGAAGGTGCAATTGCCATAGCCAATATACTGAAGGATACTGCTCCTGCCCTTGAAGTCTTGGAAATGGCTGGAAATGACATTACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGCATAGCACAAAAGCCCCATCTGACCAGCTTGAGTTTGGCTGAGAATGAACTGAAAGATGAAGGAACCATCCAAATCAGTAAGGCATTAGAAGGTTCAAACAAAATAAAGGAAGTTGACATGAATACCAACTTAATTAGGAGAGCTGGTGCTCGGGTTTTAGCTCAAACTGTGGTTCAAAAGCCTGGTTTCCAACTGCTAAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATTTTCAAGAAATCTCCGAATATGCTTGGGCCCTTGGATGAAAACGATCCTGAAGGGGAAGATGGCAACGACGAGGAATCTGTAGCGGAGGATGAGGAGGAGGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTTAATCAAGAGAACTAG 1722 43.15 MRISFSFYHHLYYAQYTASIHLHQAARFRARLIMDSVAKNSERRPISIKLWPPSENTRKMLVERMTNNLTSKSFFTQKYGTLSQEEATDESKRIEDIAFETANQNYEKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEADKEAGSDITSAPPEICFDISKGRRAFIVAEEAEELLKPLKEPGNSYTKICFSNRSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRPESEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQSCLEELYLMNDGISKEAAQAVSELIPSTDKLKILHFHNNMTGDEGAFAIAEVVKRSPLLEDFRCSSTRIDSEGGVALSSALGTCTRLKKLDLRDNMFGVEGGVALSKALSHHADLKELYLSYLNLEDEGAIAIANILKDTAPALEVLEMAGNDITAEAASALAACIAQKPHLTSLSLAENELKDEGTIQISKALEGSNKIKEVDMNTNLIRRAGARVLAQTVVQKPGFQLLNINGNFISDEGIDELKDIFKKSPNMLGPLDENDPEGEDGNDEESVAEDEEEEDELGSKLKNLEVNQEN 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5730118 5732909 + CrPI670011_05g006510.1 Cre05g0651 497164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0651 573 SUPERFAMILY RNI-like 171 552 - -
Cre05g0651 573 Pfam WPP domain 47 142 IPR025265 -
Cre05g0651 573 Pfam Leucine Rich repeat 358 380 IPR001611 GO:0005515(InterPro)
Cre05g0651 573 Pfam Leucine Rich repeat 418 437 IPR001611 GO:0005515(InterPro)
Cre05g0651 573 Pfam Leucine Rich repeat 443 460 IPR001611 GO:0005515(InterPro)
Cre05g0651 573 Pfam Leucine Rich repeat 249 267 IPR001611 GO:0005515(InterPro)
Cre05g0651 573 Pfam Leucine Rich repeat 388 408 IPR001611 GO:0005515(InterPro)
Cre05g0651 573 Gene3D WPP domain 47 145 IPR038214 -
Cre05g0651 573 Gene3D Ribonuclease Inhibitor 162 441 IPR032675 -
Cre05g0651 573 SMART LRR_RI_2 415 442 - -
Cre05g0651 573 SMART LRR_RI_2 358 385 - -
Cre05g0651 573 SMART LRR_RI_2 499 526 - -
Cre05g0651 573 SMART LRR_RI_2 246 273 - -
Cre05g0651 573 SMART LRR_RI_2 274 301 - -
Cre05g0651 573 SMART LRR_RI_2 443 470 - -
Cre05g0651 573 SMART LRR_RI_2 471 498 - -
Cre05g0651 573 SMART LRR_RI_2 386 413 - -
Cre05g0651 573 SMART LRR_RI_2 302 329 - -
Cre05g0651 573 MobiDBLite consensus disorder prediction 527 573 - -
Cre05g0651 573 Gene3D Ribonuclease Inhibitor 442 559 IPR032675 -
Cre05g0651 573 Coils Coil 550 570 - -
Cre05g0651 573 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 39 572 IPR045203 GO:0005096(InterPro)
Cre05g0651 573 MobiDBLite consensus disorder prediction 536 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0651 K14319 - - csv:101208192 930.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0651 Cre-Chr5:5730118 Cre09g0714 Cre-Chr9:6914002 1.90E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69