Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0660 ATGTCGACCTACCTGAGTCAAAACCCCTCTCCACGTGGAATTGTTGACTTTTGCCACATCACACTTCCTCGTGGAATTCATCATCATCTTCTTCTTCCTCTTCGTCCTCTTCGTTCGTTGAGAGGCGAAAAAACTAAAAGAAGGCAACAATTCCTGATAAGGTCTCTTGGAGGTTTCGGTGAATGTACCTATCAGAATAGACGGCAACAAATCAAAGCCATGAGTGGGACTTCGATTGAGGCTGATGCTGAGAACATTCTAAGAGCAATTACACCTAGTCTTGATCCCAATAGATACAAAGGCCAGGCGGGGAAGATAGCTGTTATTGGTGGATGTCGTGAGTACACAGGTGCTCCCTACTTTGCAGCTATATCAGCTTTGAAAATTGGTGCAGATTTATCTCATATTTTCTGCACAAAAGATGCTGCTCCTGTCATAAAGAGCTATAGTCCAGAGTTAATTGTGCATCCTGTTCTAGAAGAATCATACAGTGTCAGAGATGAGGAAAAGAAGTCCATCGCAGAAAGGGTTCTTACTGAGGTTGACAAGTGGCTGGAAAGATTTGATTGTCTTGTCATTGGTCCAGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTCAGTGAAATCATAAAGCATGCAAGGCAGAGCAATATACCAATAGTCATAGATGGGGATGGTCTCTTTCTTATCACTGACAATCTTCACCTTGTAAGCAATTACCCCCTGGCGGTCCTGACTCCAAATGTAAATGAATATAAACGTCTTGTGAAAAATGTGCTGCTTGCTGAAGTTGATGAACAAGATGCTCCTAACCAATTGCTGTCTCTTGCCAAAAGGATTGGTGGCCTAACTATCCTCAGGAAAGGGAGAGCTGACCTCATCAGTGACGGTGAGACAGTCAAATCAGTGAGCATTTATGGTTCTCCCCGCCGTTGTGGTGGCCAAGGTGATATACTTTCAGGAAGTGTTGCAGTTTTCGTATCTTGGGCCCAACGACAAGGTTTAGTCACAGATGGGAATTTGGCTACCAGTCCAAAGAATCCAACAGTGTTAGGGTGCATTGCTGGATCTGCTTTACTTAGAAGGGCTGCATCACTTGCATTTGAGAACAAGAAAAGATCAACCCTTACTACTGATATCATCGAGTTCTTGTGGAGAAGTTTAGAGGACATTTCTCCAGCTCACTAA 1191 43.83 MSTYLSQNPSPRGIVDFCHITLPRGIHHHLLLPLRPLRSLRGEKTKRRQQFLIRSLGGFGECTYQNRRQQIKAMSGTSIEADAENILRAITPSLDPNRYKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHIFCTKDAAPVIKSYSPELIVHPVLEESYSVRDEEKKSIAERVLTEVDKWLERFDCLVIGPGLGRDPFLLDCVSEIIKHARQSNIPIVIDGDGLFLITDNLHLVSNYPLAVLTPNVNEYKRLVKNVLLAEVDEQDAPNQLLSLAKRIGGLTILRKGRADLISDGETVKSVSIYGSPRRCGGQGDILSGSVAVFVSWAQRQGLVTDGNLATSPKNPTVLGCIAGSALLRRAASLAFENKKRSTLTTDIIEFLWRSLEDISPAH 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5806390 5811673 + CrPI670011_05g006600.1 Cre05g0660 497173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0660 396 ProSiteProfiles YjeF C-terminal domain profile. 83 392 IPR000631 GO:0016836(InterPro)
Cre05g0660 396 CDD YXKO-related 96 383 IPR000631 GO:0016836(InterPro)
Cre05g0660 396 Gene3D - 82 392 IPR029056 -
Cre05g0660 396 Hamap ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 83 394 IPR000631 GO:0016836(InterPro)
Cre05g0660 396 SUPERFAMILY Ribokinase-like 85 390 IPR029056 -
Cre05g0660 396 Pfam Carbohydrate kinase 107 384 IPR000631 GO:0016836(InterPro)
Cre05g0660 396 NCBIfam NAD(P)H-hydrate dehydratase 89 329 IPR000631 GO:0016836(InterPro)
Cre05g0660 396 PANTHER ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER 64 393 - GO:0047453(PANTHER)|GO:0110051(PANTHER)
Cre05g0660 396 FunFam ATP-dependent (S)-NAD(P)H-hydrate dehydratase 81 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0660 K17757 - - csv:101209583 649.818
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g442 . . . . . Bpe14g01317 . . . . . Cma14g01681 . Car14g01515 . . Cpe03g01419 Bhi01g00850 . . . . . . . . . . . . . . . Cone7ag0220 Cone4ag0212 Lsi05g01449 . . Cme06g00636 . . . . . . Bma02g00691 . . . Cmo14g01726 . . . . . . . . . . . . . Cla05g00573 Cam05g0628 Cec05g0639 Cco05g0633 Clacu05g0624 Cmu05g0592 Cre05g0660 . Csa03g01361 Chy06g00606 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005984 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 2 2 1 1 1 1 1 38