Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0667 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCCCCGCCTCCTCCTCCTCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCTCAATCTCTTTCTCCTACTCCACCTCCGCCGCTGCAGACCCATCAGTTCACCAATTCCCACCCTCCTCCCCCGCACAGCCACCCTTACGGTCCAACTTCTCAGCCACCACCTCTGCCGCCGATTCCTCATCCCCCTGCCCCTGCCCCCGCTCCTCACCCTTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGTCCTTGCCGTTTGTGGAGCATCGGCAAGCAAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAACCCAACTGTAGGTTTGTTCCAGTATATCCTGATGCCTTTAAGCCAGTCAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTAGGGTTTTTCGAGTTGGAGGACCTCTCAAAACCATCACCTGGAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCTGATGAAGAACAAATTGGTGAGCCTCAGCGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCTTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGATTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATCTGTCGTCAACCGATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1182 46.28 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPTPPPPLQTHQFTNSHPPPPHSHPYGPTSQPPPLPPIPHPPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELEDLSKPSPGEDIFPLVISAETCSPSQSDEEQIGEPQRDNSHMQITQAVLEKKNGGLFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNSDQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5878820 5882732 - CrPI670011_05g006670.1 Cre05g0667 497180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0667 393 PANTHER MAHOGUNIN 64 391 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Cre05g0667 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Cre05g0667 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Cre05g0667 393 MobiDBLite consensus disorder prediction 38 83 - -
Cre05g0667 393 SMART ring_2 338 376 IPR001841 -
Cre05g0667 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Cre05g0667 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Cre05g0667 393 SUPERFAMILY RING/U-box 337 383 - -
Cre05g0667 393 MobiDBLite consensus disorder prediction 14 28 - -
Cre05g0667 393 MobiDBLite consensus disorder prediction 1 83 - -
Cre05g0667 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0667 Cre-Chr5:5878820 Cre10g2149 Cre-Chr10:36045261 9.30E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0667 K27504 - csv:101203938 681.019