Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0683 ATGGGTTGTGTTCTTGGAAAGTGTTGCACTTCCAGTCGTTACCAGCCGTCTTCCGACGGCGATATCACCCAATTTGGTGATGCCCCGCCGTGTAGTTTACATGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTACAATTTGGAGTATTCGCTTCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAACATCCACATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAGCTACTGTGTAATGATTCAAAATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGCGGTACAACAGCTATTACTGTTCTTGTTCTTGGGAATACACTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTGGCTGAGGACATGTCTCATGATCAAACACCGTTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAGAGTGAAGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACGCGGAGTGTAGGAGACAGTGCAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAACCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATGCCGATCCGCGGGATGCATGCTCTGCTATCGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCCTCTCTAATTCAGGTGGCACTGGAACTGTTGGGCTGAATGGGGTCCACATAAGGCATTCAAATTCAGAGCGGGGAACCTCCGAGATATCAGCTACCACTGGAAGTTCAGAGGCCTTTCGCTCCTTCAGAAGTGATTTATCAGATCTGCATATCTCTCAGCATGTGGGTTTGATGAACAGGAGTACAGCAATTGTCGTTCCATCTCCTGCGCAGCACCGACCATTAGAAGTGGAAGTGGGCTAA 1290 45.19 MGCVLGKCCTSSRYQPSSDGDITQFGDAPPCSLHGKHILTGRSLESVRVPSHNYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSKLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVLGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSAAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMAARYADPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGGTGTVGLNGVHIRHSNSERGTSEISATTGSSEAFRSFRSDLSDLHISQHVGLMNRSTAIVVPSPAQHRPLEVEVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6004867 6008177 + CrPI670011_05g006830.1 Cre05g0683 497196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0683 429 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cre05g0683 429 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Cre05g0683 429 Gene3D - 43 349 IPR036457 -
Cre05g0683 429 PANTHER PROTEIN PHOSPHATASE 58 346 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre05g0683 429 Pfam Protein phosphatase 2C 79 322 IPR001932 -
Cre05g0683 429 SMART PP2C_4 49 345 IPR001932 -
Cre05g0683 429 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 52 349 - -
Cre05g0683 429 CDD PP2Cc 73 347 IPR001932 -
Cre05g0683 429 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0683 Cre-Chr5:6004867 Cre11g1393 Cre-Chr11:17786343 6.90E-24 dispersed
Cre05g2429 Cre-Chr5:35714203 Cre05g0683 Cre-Chr5:6004867 9.30E-10 transposed
Cre05g0683 Cre-Chr5:6004867 Cre06g1319 Cre-Chr6:7144544 1.10E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0683 - - - 0.0