Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0688 ATGTTCCTTCCGTCCAAAAGTATGGGAAAGGTCCCACCGGTTGCAATTTTCCCCCTCGGTGACCTCTCACCAGAAATATCAACACCAATTCACGAAATTGCCCTCAACAAATCATTGAATTACCTCCAACTCCCAAGTCCCAAATTTGTGAAGAACCAAGAAAGATTGCCATTATTGATATGTGTGCCACGCCAAATCGAAGAAGTATGGTCAAAATGGTATGTTCTCATCTCCATAATTCAGCAATTTTGTCTGACCACGTGGCTTAATTTCATTGGGTCGGTGGTCCACATAGAGGGAAACTGTGATCCCCAGTCCTCACAAGATTCGCACATTCATTTTTTGAAAGTTTCTACAACATTGGATATTGAAGGGTTGATTGGAGAGGAAAGAATGTCCTCCTTAATGCATGGATCACTGCTGCAGACTATAGCAGATTGTGATCAAGGATTGTTGAGGAGGGGAAAGTACCATTTGGGTCACACCCATCTTCTCAAAGAAAAACATTCATCTTTGAGGGCAAATAGGGGTGGTAGAAGTAAAGGTATTTGCTGCCAGGACTTGCATATCAGTAGCCCAAAGCCAGAGAGACATGAGCCTCCTAATCGTCATGGTTCAAGAGCCGATGCTGTCCTTAGTCCTGTAATACCTACTACCAAAAAGAGAGTATTCACTTTTGGAAAAGGAAGGAGTGAGGGTAACAAGAGCATGAAGTCCTTGTTGGGAGGGAAGGGAGCAAACCTTGCAGAGATGGCGAGCATTGGGTTGTCCGTTCCGCCTGGAATCACCATCTCAACTGAAGCATGCCAAGAGTACGAGCAAAATGGAAATAGATTACCAGATGGCTTGTGGGAAGAGATACTGGAAGGCTTGGAAAGTGTTGAAAAGGACATGGGAGCGGTTCTTGGAGATCCTTCGAAGCCTCTCCTTCTCTCGGTTCGGTCTGGTGCTGCTATCTCAATGCCTGGAATGATGGATACTGTCCTTAACCTTGGATTAAACGACGAAGTGGTTTCTGGATTGGCTGCCAAAAGTGGAGAACGCTTTGCGTACGACTCTTATAGGCGCTTTCTAGATATGTTTGGAAATGTTGTGATGGGCATTTCACATTCTTTGTTTGAGGAGAAGTTGGAAAACTTGAAAATTGCAAAAGGAAAGGCACTAGATACTGACTTAACCGCCTCGGATCTTAAGGAGCTTGTGAAACAGTACAAGGATGCTTACATCGAAGCTACGGGTGAAACGTTTCCTTCAGACCCAAAACAGCAGTTGCAATTAGCTGTCAAAGCAGTTTTCAACTCCTGGGATAGCCCGAGGGCCAACAAATATCGAAGCATCAATCAAATCACCGGGTTGAAGGGAACTGCTGTGAACATTCAATCCATGGTGTTTGGAAACATGGGCCCTACTTCTGGGACTGGAGTATTGTTCACTAGAAATCCAAGTACTGGAGAAAAGAAGCTGTATGGAGAGTTCCTCATCAATGCTCAGGGTGAAGACGTAGTTGCTGGGATAAGGACGCCTGAAGACTTGGACACCATGAAAGATTGCATGCCTGAAGCTTACAAGGAGCTGGTTGAGAACTGTGAAATTTTAGAGAGACATTACAAAGACATGATGGATATTGAGTTCACAGTCCAAGAAAATAGGCTATGGATGTTGCAATGTCGTTCTGGAAAACGCACAGGTAAGGGTGCTGTGAAGATAGCTGTAGATTTGGTGAATGAAGGACTTGTTGACACTCGTACTGCGATTAAGATGGTTGAGCCACAACATCTCGACCAACTTCTTCATCCTCAGTTTGAAGATCCCTCTGCTTACAAGGACCAAGTGGTTGCAACAGGCTTGCCTGCATCTCCCGGAGCAGCAGTGGGGCAGGTAGTATTCAATGCCGATGACGCTGAAGCCTGGCATGCTCAGGGAAAGAGTGTCATCTTGGTAAGGGCAGAGACCAGCCCAGAGGATGTTGGTGGTATGCATGCAGCTACTGGAATTTTGACAGCTAGAGGTGGAATGACTTCTCATGCTGCTGTTGTTGCTCGTGGATGGGGGAAATGCTGCATTTCTGGTTGCTCAGATATCAGAGTAAACGACTCCGAGAAGGTTCTTGTCATTGGAGATTTGGTAATCAATGAAGGTGACTGGATATCCCTCAATGGCTCTACAGGTGAAGTGATATTGGGCAAGCAGCCACTCTCTCCCCCAGCTTTAAGTAGGGATTTGGAGATCTTTATGTCTTGGGCTGATCAAATAAGACGTCTCAAGGTTATGGCCAATGCTGACACTCCTGAAGATGCTCTTACAGCTCGTAACAATGGCGCCCAAGGAATCGGCTTGTGCAGGACAGAGCATATGTTCTTTGCATCTGATGAGAGGATCAGAGCTGTAAGGAAGATGATAATGGCAGTTACAGTGGAACAAAGAAAGGCGGCTTTGGACTTGTTACTACCTTATCAAAGATCCGATTTTGAGGGAATTTTCCGCGCGATGGATGGTCTTCCAGTGACTATTAGACTGTTGGACCCTCCACTCCATGAATTCCTTCCGGAAGGCGACCTGGAAGAGATTGTGAAAGGACTAACTGCAGAGACTGAAATGAGTGAAGATGAAGTGTTCTCTAGAATTGAGAAGCTCTCGGAAGTTAACCCAATGCTCGGTTTTCGCGGTTGCAGGCTTGGGATTTCGTACCCGGAGCTGACGGAAATGCAAGCTCGTGCTATTTTCCAAGCTGCTATCTCAATGAGCAATCAAGGAATTAAAGTTTTGCCTGAGATAATGGTTCCATTGGTTGGAACACCACAAGAACTAAGACATCAAGTCAGCTCGATTCGCCGCGTTGCTGAGAATGTGTTCTCAGAGATGGGTTCCTCCTTAAATTACAAAGTGGGAACCATGATTGAAATTCCTAGAGCTGCTCTGGTTGCAGATGAGATTGCTAAGGAAGCAGAGTTCTTCTCATTTGGGACCAATGATCTTACACAAATGACTTTTGGATACAGTAGAGATGATGTTGGCAAGTTTCTTCCTATTTATATATCCAAAGGAATTCTGCAAAATGACCCTTTTGAGGTGCTTGACCAGAAAGGAGTTGGGCAACTGATCAAGCTGGCTACAGAAAAAGGGAGGGCAGCTAGGCCAAGTTTGAAGGTTGGAATTTGTGGAGAACATGGAGGAGAGCCTTCATCTGTTGCATTCTTTGCAGAGGCTGGACTTGATTATGTTTCTTGTTCTCCTTTCAGAGTTCCAGTTGCAAGATTGGCTGCAGCCCAAGTTGCTGTTTAA 3282 45.31 MFLPSKSMGKVPPVAIFPLGDLSPEISTPIHEIALNKSLNYLQLPSPKFVKNQERLPLLICVPRQIEEVWSKWYVLISIIQQFCLTTWLNFIGSVVHIEGNCDPQSSQDSHIHFLKVSTTLDIEGLIGEERMSSLMHGSLLQTIADCDQGLLRRGKYHLGHTHLLKEKHSSLRANRGGRSKGICCQDLHISSPKPERHEPPNRHGSRADAVLSPVIPTTKKRVFTFGKGRSEGNKSMKSLLGGKGANLAEMASIGLSVPPGITISTEACQEYEQNGNRLPDGLWEEILEGLESVEKDMGAVLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVSGLAAKSGERFAYDSYRRFLDMFGNVVMGISHSLFEEKLENLKIAKGKALDTDLTASDLKELVKQYKDAYIEATGETFPSDPKQQLQLAVKAVFNSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGPTSGTGVLFTRNPSTGEKKLYGEFLINAQGEDVVAGIRTPEDLDTMKDCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVNEGLVDTRTAIKMVEPQHLDQLLHPQFEDPSAYKDQVVATGLPASPGAAVGQVVFNADDAEAWHAQGKSVILVRAETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCISGCSDIRVNDSEKVLVIGDLVINEGDWISLNGSTGEVILGKQPLSPPALSRDLEIFMSWADQIRRLKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIRAVRKMIMAVTVEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEEIVKGLTAETEMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSNQGIKVLPEIMVPLVGTPQELRHQVSSIRRVAENVFSEMGSSLNYKVGTMIEIPRAALVADEIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYISKGILQNDPFEVLDQKGVGQLIKLATEKGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPVARLAAAQVAV 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6037030 6046215 + CrPI670011_05g006880.1 Cre05g0688 497201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0688 1093 FunFam Pyruvate, phosphate dikinase, chloroplastic 603 729 - -
Cre05g0688 1093 FunFam Pyruvate, phosphate dikinase, chloroplastic 753 1093 - -
Cre05g0688 1093 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 740 1092 IPR015813 GO:0003824(InterPro)
Cre05g0688 1093 MobiDBLite consensus disorder prediction 189 208 - -
Cre05g0688 1093 FunFam Pyruvate, phosphate dikinase, chloroplastic 464 561 - -
Cre05g0688 1093 Gene3D Phosphohistidine domain 603 729 - -
Cre05g0688 1093 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 521 575 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Cre05g0688 1093 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 280 512 IPR002192 GO:0005524(InterPro)|GO:0016301(InterPro)|GO:0016310(InterPro)
Cre05g0688 1093 MobiDBLite consensus disorder prediction 191 205 - -
Cre05g0688 1093 Gene3D - 753 1093 IPR040442 -
Cre05g0688 1093 NCBIfam pyruvate, phosphate dikinase 220 1093 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Cre05g0688 1093 Pfam PEP-utilising enzyme, PEP-binding domain 738 1092 IPR000121 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g0688 1093 ProSitePatterns PEP-utilizing enzymes signature 2. 983 1001 IPR023151 GO:0016772(InterPro)
Cre05g0688 1093 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 670 681 IPR018274 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g0688 1093 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 218 1093 IPR010121 GO:0006090(InterPro)|GO:0050242(InterPro)
Cre05g0688 1093 Gene3D Pyruvate Phosphate Dikinase, domain 2 562 750 - -
Cre05g0688 1093 Pfam PEP-utilising enzyme, mobile domain 642 723 IPR008279 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g0688 1093 Gene3D - 464 561 - -
Cre05g0688 1093 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 222 599 - -
Cre05g0688 1093 Gene3D - 223 463 IPR013815 GO:0005524(InterPro)
Cre05g0688 1093 SUPERFAMILY Phosphohistidine domain 607 731 IPR036637 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre05g0688 1093 Gene3D - 332 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0688 K01006 - - csv:101214608 1840.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32