Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0707 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.22 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6252309 6255176 + CrPI670011_05g007070.1 Cre05g0707 497220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0707 387 CDD F-box_AtTLP-like 35 79 - -
Cre05g0707 387 Pfam Tub family 96 382 IPR000007 -
Cre05g0707 387 PANTHER TUBBY-RELATED 25 386 - -
Cre05g0707 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cre05g0707 387 FunFam Tubby-like F-box protein 92 387 - -
Cre05g0707 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Cre05g0707 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cre05g0707 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cre05g0707 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cre05g0707 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cre05g0707 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0707 Cre-Chr5:6252309 Cre08g0649 Cre-Chr8:19438036 2.50E-121 dispersed
Cre07g1395 Cre-Chr7:28848010 Cre05g0707 Cre-Chr5:6252309 9.40E-102 transposed
Cre08g0325 Cre-Chr8:10012404 Cre05g0707 Cre-Chr5:6252309 3.20E-122 transposed
Cre05g0707 Cre-Chr5:6252309 Cre06g1299 Cre-Chr6:6911502 3.90E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53634 PF01167 Tub 1.60E-110 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0707 K19600 - csv:101217713 774.237