Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0708 ATGGGGTGTGTTTTTGGGCGAGAAGTATCTGAGAATCCCGTCCAGAAAGAAGAGGAGGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTCAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGTGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCAGAGAAGTGAGCGGCCGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCTGGATGGCCTTCTTGGCTTTCCGCCGTCGCCGGTGAGGCTATCAACGGATGGATTCCTCGCCGTGCTGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCCTGCGACGTCTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTGGTGACATCCCGGATGTCTTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACAGAACCACAGGTTAAATGCTACATGCACCAATTGTTATCAGGGCTCGAACACTGTCATAACCGTCATGTGCTGCATCGAGATATAAAGGGATCGAATCTTCTGATCGGTAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAGCCTATCATGCCCGGTCGCACGGAGGTTGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACATTTAAAGACTTCCCACCATCGTCTCTGCCACTAATCGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACTGCTGCATTACATAGTGAATTTTTCACTACCAAACCATATGCTTGTGAACCTTCCAGCCTCCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTCCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAAAAATCACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGACGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATTGATCCAATCTACGATCCTCCCGACGTTCCATTTAGCACAATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAGCACACAGCAGGCGACGGGCATTCATCAAAATCATCTAAAGACTTACGAAAAGATAAAAATTCAGTTCGGATCTAA 1716 47.38 MGCVFGREVSENPVQKEEEEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVEDDRGSRQRSERPRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKNSVRI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6258340 6262175 - CrPI670011_05g007080.1 Cre05g0708 497221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0708 571 MobiDBLite consensus disorder prediction 49 72 - -
Cre05g0708 571 MobiDBLite consensus disorder prediction 532 571 - -
Cre05g0708 571 MobiDBLite consensus disorder prediction 1 84 - -
Cre05g0708 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Cre05g0708 571 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0708 571 MobiDBLite consensus disorder prediction 541 571 - -
Cre05g0708 571 MobiDBLite consensus disorder prediction 11 33 - -
Cre05g0708 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0708 571 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre05g0708 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0708 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Cre05g0708 571 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Cre05g0708 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0708 571 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Cre05g0708 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Cre05g0708 571 CDD STKc_CDK9_like 113 397 - -
Cre05g0708 571 MobiDBLite consensus disorder prediction 477 498 - -
Cre05g0708 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1537 Cre-Chr1:28587527 Cre05g0708 Cre-Chr5:6258340 1.40E-159 dispersed
Cre02g1945 Cre-Chr2:32843622 Cre05g0708 Cre-Chr5:6258340 4.00E-221 dispersed
Cre02g2078 Cre-Chr2:34274779 Cre05g0708 Cre-Chr5:6258340 3.00E-161 dispersed
Cre03g1910 Cre-Chr3:36136732 Cre05g0708 Cre-Chr5:6258340 6.40E-230 dispersed
Cre05g0708 Cre-Chr5:6258340 Cre05g1117 Cre-Chr5:10515345 1.30E-182 dispersed
Cre02g2717 Cre-Chr2:40339758 Cre05g0708 Cre-Chr5:6258340 8.20E-97 transposed
Cre03g0691 Cre-Chr3:5808259 Cre05g0708 Cre-Chr5:6258340 2.70E-201 transposed
Cre04g0379 Cre-Chr4:13084484 Cre05g0708 Cre-Chr5:6258340 4.80E-11 transposed
Cre04g1214 Cre-Chr4:30828057 Cre05g0708 Cre-Chr5:6258340 8.20E-121 transposed
Cre06g2316 Cre-Chr6:31101608 Cre05g0708 Cre-Chr5:6258340 1.00E-56 transposed
Cre08g0070 Cre-Chr8:1516257 Cre05g0708 Cre-Chr5:6258340 5.40E-161 transposed
Cre08g0267 Cre-Chr8:7173931 Cre05g0708 Cre-Chr5:6258340 2.70E-122 transposed
Cre08g1663 Cre-Chr8:29127974 Cre05g0708 Cre-Chr5:6258340 7.40E-65 transposed
Cre11g0557 Cre-Chr11:2596343 Cre05g0708 Cre-Chr5:6258340 1.70E-171 transposed
Cre11g1815 Cre-Chr11:29755793 Cre05g0708 Cre-Chr5:6258340 8.40E-64 transposed
Cre11g2295 Cre-Chr11:34586839 Cre05g0708 Cre-Chr5:6258340 1.80E-50 transposed
Cre02g1899 Cre-Chr2:32333377 Cre05g0708 Cre-Chr5:6258340 1.20E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64127 PF00069 Pkinase 2.80E-68 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0708 K08819 - csv:101217952 1083.94