Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0725 | ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGCGAAAAGGAGTGTTCTTATTATTTGAAGAACGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCAGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCAACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGGCACAAGCTTTCAATTCGAATTGAATATGAATTTGAAGCTGTGTTATTCCCACTCGTTTTTTTCCCTCATTTATTGTGGAAAAAGATGTATTTAAGACTCTGGGAGTCATCCCAATGGCAATGTGATCTTGAGAGCAATGATGATGCTTTGCTTACCCAGCAATACTTGAGTCTTTTTGTAAAGCAGGTTCCTGATTTAGTTTGTCTTGAAGAGGGAATCTTTTCAGATTCAGATATCCACTTCCTTTTCCCCTTTCTGAAGGTTACTGTTGGTTTCTAG | 1713 | 47.87 | MKPYGHSIEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDQLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRHKLSIRIEYEFEAVLFPLVFFPHLLWKKMYLRLWESSQWQCDLESNDDALLTQQYLSLFVKQVPDLVCLEEGIFSDSDIHFLFPFLKVTVGF | 570 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6431263 | 6435944 | - | CrPI670011_05g007250.1 | Cre05g0725 | 497238 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0725 | 570 | Gene3D | - | 90 | 170 | - | - | |
Cre05g0725 | 570 | Gene3D | - | 292 | 338 | - | - | |
Cre05g0725 | 570 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 328 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 349 | 374 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 118 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SUPERFAMILY | CCCH zinc finger | 351 | 378 | IPR036855 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | MobiDBLite | consensus disorder prediction | 423 | 475 | - | - | |
Cre05g0725 | 570 | FunFam | CCCH type zinc finger protein | 299 | 384 | - | - | |
Cre05g0725 | 570 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SMART | c3hfinal6 | 347 | 374 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SMART | c3hfinal6 | 301 | 328 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SUPERFAMILY | CCCH zinc finger | 94 | 122 | IPR036855 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SUPERFAMILY | CCCH zinc finger | 48 | 75 | IPR036855 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | MobiDBLite | consensus disorder prediction | 283 | 298 | - | - | |
Cre05g0725 | 570 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cre05g0725 | 570 | ProSiteProfiles | Zinc finger C3H1-type profile. | 347 | 375 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | MobiDBLite | consensus disorder prediction | 278 | 304 | - | - | |
Cre05g0725 | 570 | ProSiteProfiles | Zinc finger C3H1-type profile. | 301 | 329 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | SUPERFAMILY | CCCH zinc finger | 305 | 328 | IPR036855 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | Gene3D | - | 37 | 89 | - | - | |
Cre05g0725 | 570 | Gene3D | - | 344 | 392 | - | - | |
Cre05g0725 | 570 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 374 | IPR050974 | GO:0003729(PANTHER) | |
Cre05g0725 | 570 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872(InterPro) | |
Cre05g0725 | 570 | MobiDBLite | consensus disorder prediction | 402 | 475 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1343 | Cre-Chr3:24092840 | Cre05g0725 | Cre-Chr5:6431263 | 6.60E-22 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53637 | PF00642 | zf-CCCH | 1.60E-07 | CL0537 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0725 | - | - | - | 0.0 |