Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0725 ATGAAGCCGTACGGTCACTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGCGAAAAGGAGTGTTCTTATTATTTGAAGAACGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCAGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCAACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGGCACAAGCTTTCAATTCGAATTGAATATGAATTTGAAGCTGTGTTATTCCCACTCGTTTTTTTCCCTCATTTATTGTGGAAAAAGATGTATTTAAGACTCTGGGAGTCATCCCAATGGCAATGTGATCTTGAGAGCAATGATGATGCTTTGCTTACCCAGCAATACTTGAGTCTTTTTGTAAAGCAGGTTCCTGATTTAGTTTGTCTTGAAGAGGGAATCTTTTCAGATTCAGATATCCACTTCCTTTTCCCCTTTCTGAAGGTTACTGTTGGTTTCTAG 1713 47.87 MKPYGHSIEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDQLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRHKLSIRIEYEFEAVLFPLVFFPHLLWKKMYLRLWESSQWQCDLESNDDALLTQQYLSLFVKQVPDLVCLEEGIFSDSDIHFLFPFLKVTVGF 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6431263 6435944 - CrPI670011_05g007250.1 Cre05g0725 497238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0725 570 Gene3D - 90 170 - -
Cre05g0725 570 Gene3D - 292 338 - -
Cre05g0725 570 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 328 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 374 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SUPERFAMILY CCCH zinc finger 351 378 IPR036855 GO:0046872(InterPro)
Cre05g0725 570 MobiDBLite consensus disorder prediction 423 475 - -
Cre05g0725 570 FunFam CCCH type zinc finger protein 299 384 - -
Cre05g0725 570 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SMART c3hfinal6 347 374 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SMART c3hfinal6 301 328 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
Cre05g0725 570 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Cre05g0725 570 MobiDBLite consensus disorder prediction 283 298 - -
Cre05g0725 570 MobiDBLite consensus disorder prediction 1 44 - -
Cre05g0725 570 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 MobiDBLite consensus disorder prediction 278 304 - -
Cre05g0725 570 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Cre05g0725 570 SUPERFAMILY CCCH zinc finger 305 328 IPR036855 GO:0046872(InterPro)
Cre05g0725 570 Gene3D - 37 89 - -
Cre05g0725 570 Gene3D - 344 392 - -
Cre05g0725 570 PANTHER PROTEIN PHOSPHATASE RELATED 38 374 IPR050974 GO:0003729(PANTHER)
Cre05g0725 570 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Cre05g0725 570 MobiDBLite consensus disorder prediction 402 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1343 Cre-Chr3:24092840 Cre05g0725 Cre-Chr5:6431263 6.60E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53637 PF00642 zf-CCCH 1.60E-07 CL0537 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0725 - - - 0.0