Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0729 ATGCAAAGTAGGTTATCCTATACTTTCCAGCATACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCCGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGAAGATTCTGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCGTATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGACATAATAGCAAGGCAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACGCAGACTATGACCTGGGGAAAAATACTCGTGAGATACAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGTAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCGAGGAAAAGAAGTAAGAAAGCTCTATTCGGAGATGAATCTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGTCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGATGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAAAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCACATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAATTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTTATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGAAACAAATTGAGGAGAGTGTTCATGAGGGAAAGAGCAGTGTGCCCGTTGAAGCTGAGAACCATGAAATTCCAAAATTAGATTCGGGCAGCAGTAATTTAAGAGACAATGATTTTGTAGAGGAGGAGGTTGAAAATTCTCCAGCAAAAGAAGGGTCAAAGAGGCCCAAAAGAGGTGGGGCTGAGAGGAGTTACCTTACCAGAAGTTCCTATAGTCTTCCTTTGTTTAAATATGTCCACAAGGAAGCAAGAATCTGGATGAGGGGCAGGGGCACTGTCTTCAAGGTTAGTGTTCCTCCAAATGAGGAAAAGAAGGACATTCCTTGTGGGATGAGTAGCCGTTTAGGGGAACTTGGGGTTGTTTGTGGGTGGAAAATGTCAAGCCAATATGACAAATCATCTGAATACCCACCTTTGTTTTTTCTTCTCTCTTTTGAGGTTAAGAAAAAATTACGTGTTACAGCTTCGTATCTGTATTGTATCCATCCATCCTCATGCACACGCACACTCACACTTGCACAG 3135 41.63 MQSRLSYTFQHTRFDGDQPFENRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKAKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNADYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSVRSSFKGPRKRSKKALFGDESSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKMGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKKQIEESVHEGKSSVPVEAENHEIPKLDSGSSNLRDNDFVEEEVENSPAKEGSKRPKRGGAERSYLTRSSYSLPLFKYVHKEARIWMRGRGTVFKVSVPPNEEKKDIPCGMSSRLGELGVVCGWKMSSQYDKSSEYPPLFFLLSFEVKKKLRVTASYLYCIHPSSCTRTLTLAQ 1045
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6475279 6489214 + CrPI670011_05g007290.1 Cre05g0729 497242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0729 1045 MobiDBLite consensus disorder prediction 431 574 - -
Cre05g0729 1045 Coils Coil 710 730 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 172 188 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 143 188 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 265 281 - -
Cre05g0729 1045 Pfam DIRP 657 758 IPR033471 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 906 933 - -
Cre05g0729 1045 CDD SANT 74 108 IPR001005 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 208 250 - -
Cre05g0729 1045 Gene3D - 15 126 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 507 540 - -
Cre05g0729 1045 SMART DIRP_2 658 759 IPR033471 -
Cre05g0729 1045 SMART sant 70 118 IPR001005 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 437 455 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 872 896 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 224 250 - -
Cre05g0729 1045 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 108 IPR017930 -
Cre05g0729 1045 ProSiteProfiles SANT domain profile. 69 106 IPR017884 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 143 161 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 31 55 - -
Cre05g0729 1045 SUPERFAMILY Homeodomain-like 69 116 IPR009057 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 35 52 - -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 265 284 - -
Cre05g0729 1045 Pfam Myb-like DNA-binding domain 73 108 IPR001005 -
Cre05g0729 1045 MobiDBLite consensus disorder prediction 872 934 - -
Cre05g0729 1045 PANTHER LIN-9 28 883 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Cre05g0729 1045 MobiDBLite consensus disorder prediction 556 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1877 Cre-Chr2:32016175 Cre05g0729 Cre-Chr5:6475279 6.60E-30 transposed
Cre02g1876 Cre-Chr2:32001210 Cre05g0729 Cre-Chr5:6475279 5.60E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53641 PF06584 DIRP 2.10E-30 No_clan Cre TF