Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0766 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAATCGGTGTCAATCGCAAAGACTCCGACATCGCTGGTGGCGGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCTCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATCAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTAACAGAATCACAGACAATTTCGATATCCAGAAAATTGATGATTACATTGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTGGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGACGGCTGTTGGAGGAATCCGATGAACAAGAGAAAGAGCCGTCGTGGGTTAGTGACAGACGTGGGCTACTTCAAGCCACCGGCGCCACCATCAAGGCGGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGGTAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCTACTGTTGCGGTGATTGGAACCAACTTCATCGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAAGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCGTCCGCCACATCCACAAAGCCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGGTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGAGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCGCCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.86 MSDDGGKNKKAALIGVSSLFLVAMVVAVAIGVNRKDSDIAGGGGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFNRITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQEKEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMVEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPVRHIHKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHAADFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6754181 6755976 - CrPI670011_05g007660.1 Cre05g0766 497279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0766 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cre05g0766 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cre05g0766 568 CDD PMEI-like_3 58 210 - -
Cre05g0766 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre05g0766 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cre05g0766 568 Gene3D - 249 565 IPR012334 -
Cre05g0766 568 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
Cre05g0766 568 NCBIfam pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857(InterPro)
Cre05g0766 568 FunFam Pectinesterase 249 565 - -
Cre05g0766 568 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre05g0766 568 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cre05g0766 568 FunFam Pectinesterase 52 209 - -
Cre05g0766 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cre05g0766 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1985 Cre-Chr3:36853599 Cre05g0766 Cre-Chr5:6754181 9.90E-199 dispersed
Cre05g0766 Cre-Chr5:6754181 Cre11g0517 Cre-Chr11:2126606 1.80E-136 dispersed
Cre01g1573 Cre-Chr1:28844525 Cre05g0766 Cre-Chr5:6754181 8.40E-11 transposed
Cre03g1104 Cre-Chr3:10553346 Cre05g0766 Cre-Chr5:6754181 5.80E-119 transposed
Cre05g0766 Cre-Chr5:6754181 Cre06g1255 Cre-Chr6:6464256 2.90E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0766 K01051 - csv:101212686 1021.15