Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0812 ATGGAAAAGAAATTTGAAGACTCACTGATGGGGTTTGATAATTCTGCTGGATTTTACTCTCCGGCGGTGTTTTCCGATGAGTTTCCGGCGTCGAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTTCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTTACAATATTAATAATAATGATAATAATAATAATAATATTCCTTCTTCTTCTTCTTCTAATTTCTTCGATTTGCTTTCTACGGCGGCTCCGCCTCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCCTCCGAGGTTCTTAATGCTCCACCCACTCCTAATTCTTCCTCTGTTTCTTCCTCCTCCAATGAAGCTACAGCTGCCATTCAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGATGGTTACCGATGGCGAAAGTACGGTCAAAAAGCAGTGAAGAACAGCCCTTATCCTAGAAGCTATTATCGTTGTACGACGGCAGGGTGCGATGTGAAGAAGAGAGTAGAACGATCGTCCGGCGACCATTCGATAGTTGTTACGACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCGCGAGGAAGTATCAGAGTTTTACCAGAATCCACCAACAACGGTCTCATCGCCGATCACGACACCACCGCCACTGGACTTTTATTCCAACACAACACTCCCCAACCCTTCATGTGTAGCTCTCCGCCGCCGCCATTTCTAACAATCAACTCGTCGGTGGCGGCGGGAAGTTCCCGTCCTGCTCCTCCTCCTACTTCCTTCCCGCCACCACCGTCTCAAGCTTCTTTGGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.46 MEKKFEDSLMGFDNSAGFYSPAVFSDEFPASNFDSFSSIFDMPCDDHKASAAASCSSNSFDLFSSGIEIHDFYNINNNDNNNNNIPSSSSSNFFDLLSTAAPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSNEATAAIQEVDKINNNTEKPSSSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRGSIRVLPESTNNGLIADHDTTATGLLFQHNTPQPFMCSSPPPPFLTINSSVAAGSSRPAPPPTSFPPPPSQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7201861 7203397 + CrPI670011_05g008120.1 Cre05g0812 497325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0812 348 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0812 348 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0812 348 MobiDBLite consensus disorder prediction 105 155 - -
Cre05g0812 348 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0812 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 256 IPR044810 GO:0003700(InterPro)
Cre05g0812 348 MobiDBLite consensus disorder prediction 295 348 - -
Cre05g0812 348 FunFam WRKY transcription factor 57 171 245 - -
Cre05g0812 348 SMART WRKY_cls 185 244 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0812 348 Gene3D WRKY domain 170 246 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0812 348 MobiDBLite consensus disorder prediction 105 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0812 Cre-Chr5:7201861 Cre10g1316 Cre-Chr10:26507672 2.40E-35 dispersed
Cre05g0812 Cre-Chr5:7201861 Cre06g1206 Cre-Chr6:5917369 2.70E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53648 PF03106 WRKY 9.20E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0812 - - - 0.0