Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0875 ATGGAGGACGATTTCGAGTTCCCGTCTGCAAGCAATGTAGACGAGGAAATGGGCTTGCCTGAGGACGAAGCGGAGAGCTCAGTTCTGAAGGTTGGCGAAGAGAAGGAGATTGGAAAGTATGGGCTGAAGAAGAAACTTGTTAAAGAAGGCGAAGGATGGGAAACTCCCGAGACTGGTGATGAAGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGAACTCAATTCGATTCGAGCCGTGACCGAGGAACGCCCTTCAAGTTCAAGCTCGGGGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATTAGAACAATGAAAAAGGGTGAAAGTGCAGTTTTCACGATACCCCCTGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACAATTCCACCGAATGCTACTCTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGACATCTGCCAAGATGGAGGAATCTTGAAAAAGATCCTTGTTAAAGGAGACGGCTGGGACAAACCGAAGGATTTGGACGAAGTCTCGGTTCTTTATGAGGCTCGTCTTGAAGATGGTACACTGATCTCAAAGTCTGATGGGGCCGAATTCACTGTTGAAAAAGGGTACTTCTGTCCTGCCTTGGCAACGTCCGTGAAGACCATGAAGAAGGGAGAGAAAGCTTTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGTAGGCCTGGAGCTGGAGAAGAAGGTGCTGTGCCTCCAAATGCCACACTTCAGATAACCCTTCAATTGGTTTCTTGGAAAACTGTTACAGAGGTTACTAAGGATAAGAAAGTCCTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGAACAGCCAAATGAGGGAGCAGTGGTGCAAGTGAAACTAACCGGTAAACTGGCCGATGGGACGATTTTTACGAAAAAGGGTGATGATGAGAAGCCATTTGAGTTCAAAACTGACGAAGAACAAGTCATTGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTTCTGATTCACCCCAAGATCTAGCTGTGGTTCCTGCAAACTCAACTGTATATTATGAAGTTGAGCTAGTTTCTTTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACAGCAGAAGAGAAAATAGAAGCAGCAGGTAAAAAGAAGGAAGAAGGAAATATTTTGTTCAAAGCTGGAAAATATGATAGAGCATCAAGGAGATATGAAAAGGCTGTGCGCTACATTGAATTCGATACTTCTTTCAGCGATGAAGAGAAGCAACAGAGCAAGGCACTGAAGATTTCGTGCAACCTCAACAATGCTGCGTGCAAATTGAAAGTCAAAGATTACAAGCAAGCAGAGAAGCTCTGTACAAAGGTGTTGGAACTTGACAGTAGGAACGTGAAAGCTCTCTATAGAAGGGCTCAGGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGATATCAAAAAAGCCCTTGAGATAGACCCAGATAACAGGGAAGTGAAGATCGAATACAGACAGTTGAAAGAGAAAGTGAGGGAATACAACAAGAGAGATGCACGGTTCTATGGCAACATTTTTGCAAAAATGAACAAGCTGGAGCAGGCGAAGTCTGCTAATTCAGCAGGGAAGCAGGAGGCAGTGCCAATGACCATTGATAGCAAAGCTTAG 1728 44.73 MEDDFEFPSASNVDEEMGLPEDEAESSVLKVGEEKEIGKYGLKKKLVKEGEGWETPETGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGESAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVSVLYEARLEDGTLISKSDGAEFTVEKGYFCPALATSVKTMKKGEKALLTVRPQYAFGESGRPGAGEEGAVPPNATLQITLQLVSWKTVTEVTKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSPQDLAVVPANSTVYYEVELVSFVKEKESWDLNTAEEKIEAAGKKKEEGNILFKAGKYDRASRRYEKAVRYIEFDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKRDARFYGNIFAKMNKLEQAKSANSAGKQEAVPMTIDSKA 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7859284 7862906 + CrPI670011_05g008750.1 Cre05g0875 497388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0875 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 260 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 FunFam Peptidylprolyl isomerase 32 150 - -
Cre05g0875 575 Coils Coil 517 537 - -
Cre05g0875 575 SMART tpr_5 401 434 IPR019734 GO:0005515(InterPro)
Cre05g0875 575 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Cre05g0875 575 SMART tpr_5 484 517 IPR019734 GO:0005515(InterPro)
Cre05g0875 575 SUPERFAMILY FKBP-like 33 151 - -
Cre05g0875 575 SUPERFAMILY FKBP-like 270 399 - -
Cre05g0875 575 SUPERFAMILY TPR-like 396 550 IPR011990 GO:0005515(InterPro)
Cre05g0875 575 PANTHER PEPTIDYLPROLYL ISOMERASE 27 145 IPR050754 -
Cre05g0875 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 Gene3D - 32 150 IPR046357 GO:0003755(InterPro)
Cre05g0875 575 SUPERFAMILY FKBP-like 151 267 - -
Cre05g0875 575 MobiDBLite consensus disorder prediction 1 22 - -
Cre05g0875 575 Pfam Tetratricopeptide repeat 484 517 IPR019734 GO:0005515(InterPro)
Cre05g0875 575 Gene3D Tetratricopeptide repeat domain 389 544 IPR011990 GO:0005515(InterPro)
Cre05g0875 575 FunFam Peptidylprolyl isomerase 388 544 - -
Cre05g0875 575 FunFam Peptidylprolyl isomerase 151 264 - -
Cre05g0875 575 Gene3D - 264 388 IPR046357 GO:0003755(InterPro)
Cre05g0875 575 Gene3D - 151 263 IPR046357 GO:0003755(InterPro)
Cre05g0875 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Cre05g0875 575 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515(InterPro)
Cre05g0875 575 MobiDBLite consensus disorder prediction 1 28 - -
Cre05g0875 575 FunFam Peptidylprolyl isomerase 265 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2706 Cre-Chr2:40272496 Cre05g0875 Cre-Chr5:7859284 7.80E-13 dispersed
Cre04g0851 Cre-Chr4:27218984 Cre05g0875 Cre-Chr5:7859284 6.40E-65 dispersed
Cre05g0875 Cre-Chr5:7859284 Cre09g0806 Cre-Chr9:8038959 4.90E-243 dispersed
Cre05g0875 Cre-Chr5:7859284 Cre05g0922 Cre-Chr5:8436640 1.20E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0875 K09571 - csv:101210041 1040.41