Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0877 ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAATGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGGGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAGTTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTTAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCGAAGGATATCTTCAAAGGTCCCAGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCAGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAG 1644 42.76 MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQMGVQEGEQQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITVGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKLEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPSSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSRYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7886855 7889175 - CrPI670011_05g008770.1 Cre05g0877 497390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0877 547 MobiDBLite consensus disorder prediction 236 262 - -
Cre05g0877 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 430 IPR036638 GO:0046983(InterPro)
Cre05g0877 547 SMART finulus 366 416 IPR011598 GO:0046983(InterPro)
Cre05g0877 547 MobiDBLite consensus disorder prediction 207 350 - -
Cre05g0877 547 CDD bHLH_AtBPE_like 350 435 - -
Cre05g0877 547 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 140 491 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre05g0877 547 MobiDBLite consensus disorder prediction 207 227 - -
Cre05g0877 547 Pfam Helix-loop-helix DNA-binding domain 364 411 IPR011598 GO:0046983(InterPro)
Cre05g0877 547 FunFam Basic helix-loop-helix transcription factor 357 430 - -
Cre05g0877 547 MobiDBLite consensus disorder prediction 330 344 - -
Cre05g0877 547 Gene3D - 357 431 IPR036638 GO:0046983(InterPro)
Cre05g0877 547 MobiDBLite consensus disorder prediction 271 329 - -
Cre05g0877 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0877 Cre-Chr5:7886855 Cre09g0809 Cre-Chr9:8075744 2.00E-68 dispersed
Cre05g0877 Cre-Chr5:7886855 Cre02g0851 Cre-Chr2:5344030 3.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53652 PF00010 HLH 1.20E-05 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0877 - - - 0.0