Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0877 | ATGGAGAAGGAATTCTTCATGAACGATGCTGGATGCAGTTTTTATGGAATGGAAATCCAACCTAATGAGCTGAATTCAAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATTGGCGGCGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGGCTTGGGAGTATTTGCAATTCTGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTACGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCCAAGCTTAATTTATCGTCGATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAACCTTGCCCCATTTTCAGCTGATCCTGGTTTTGCTGAGAGGGCTGCGAGATTTTCTTGTTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGATCAATTGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCCTTCAACATTGGTGGAATTGGATCTCAAATGGGGGTTCAAGAAGGCGAGCAGCAAAGCCCAGTTCAAAAGGGGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGTGATTCGCGAGAGGGATCTTCGGTTTCCGAGCAGATTACAGTTGGGGAATTGGGTTTGAAAGGTAAAGCTGAAACCAACACTAGAAAAAGGAAATCAGTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAACCAGATGAAGTTACTAAGAAAGAGATTGATGCTGCAAAAGGGAAGTTAGAGGCAAAAGATGGCACAAAAGCTTCAGGGGATCCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGTCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTGAATCCAAGGATGGATTTTAACATGGAGACCCTTGTACCGAAGGATATCTTCAAAGGTCCCAGTTCTTCACCGCATACGGGTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCAGTTGCCTCAGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCAGATACAACGAAGTCGTGAACGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAACTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAG | 1644 | 42.76 | MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRSIAGAGVESGKLSRVSSNKSFNIGGIGSQMGVQEGEQQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITVGELGLKGKAETNTRKRKSVQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDAAKGKLEAKDGTKASGDPNQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPSSSPHTGYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSRYNEVVNGIQISKFWEDELHTVVQMGYGQNQLQNANDEMKSEL | 547 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7886855 | 7889175 | - | CrPI670011_05g008770.1 | Cre05g0877 | 497390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0877 | 547 | MobiDBLite | consensus disorder prediction | 236 | 262 | - | - | |
Cre05g0877 | 547 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 358 | 430 | IPR036638 | GO:0046983(InterPro) | |
Cre05g0877 | 547 | SMART | finulus | 366 | 416 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0877 | 547 | MobiDBLite | consensus disorder prediction | 207 | 350 | - | - | |
Cre05g0877 | 547 | CDD | bHLH_AtBPE_like | 350 | 435 | - | - | |
Cre05g0877 | 547 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 140 | 491 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cre05g0877 | 547 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - | |
Cre05g0877 | 547 | Pfam | Helix-loop-helix DNA-binding domain | 364 | 411 | IPR011598 | GO:0046983(InterPro) | |
Cre05g0877 | 547 | FunFam | Basic helix-loop-helix transcription factor | 357 | 430 | - | - | |
Cre05g0877 | 547 | MobiDBLite | consensus disorder prediction | 330 | 344 | - | - | |
Cre05g0877 | 547 | Gene3D | - | 357 | 431 | IPR036638 | GO:0046983(InterPro) | |
Cre05g0877 | 547 | MobiDBLite | consensus disorder prediction | 271 | 329 | - | - | |
Cre05g0877 | 547 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 360 | 410 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0877 | Cre-Chr5:7886855 | Cre09g0809 | Cre-Chr9:8075744 | 2.00E-68 | dispersed | |
Cre05g0877 | Cre-Chr5:7886855 | Cre02g0851 | Cre-Chr2:5344030 | 3.30E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53652 | PF00010 | HLH | 1.20E-05 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0877 | - | - | - | 0.0 |