Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0883 | ATGGAGAAGGACAAACCCCAAGGCTATTCTGGTGGATTTCCGCCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAAGTTCATCTTCAATGTTGCTTCCTCCGATGCCTTCGGGTGCTCTTTCTGATTCAGGTCAATTTGGTCGTGAAAGGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCAAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATCCTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCTTCGACTGCCACCTCCGCAATACAAGTTGGCGAGTCATCTTCTGCTGTTGGAGATGCAATATCAACTCCTACTCCAACAATTGGAGCAGCAACCTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTCGCTGAGCTTGCGCTTATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCGGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTTCTGCTGAGAACAATGAATTAAAGCTGCGGTTGCAGACAATGGAGCAGCAAGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGGCCAACCATTTTACCCAAATAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCCCAGCAGCAGCAGCAGCAGCAACAACAACAACATTACCAGTACCATCAGCTGCATCAGCTTCATCAACAGCCAACTGGAGACAACAAATCGAAAGGATCGACTTCTTCTCCGAGTCCAAAAGACAACACATCAGATACGTCCTCTCCCACTTGTTGA | 1263 | 45.53 | MEKDKPQGYSGGFPPPSSRYSGLSPTGSIFNGKSEASSSSMLLPPMPSGALSDSGQFGRERPTDSNRFSHDISQMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGDAISTPTPTIGAATSKDDTAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHYQYHQLHQLHQQPTGDNKSKGSTSSPSPKDNTSDTSSPTC | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7947826 | 7951908 | - | CrPI670011_05g008830.1 | Cre05g0883 | 497396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0883 | 420 | MobiDBLite | consensus disorder prediction | 389 | 420 | - | - | |
Cre05g0883 | 420 | MobiDBLite | consensus disorder prediction | 58 | 76 | - | - | |
Cre05g0883 | 420 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0883 | 420 | Gene3D | - | 230 | 283 | - | - | |
Cre05g0883 | 420 | MobiDBLite | consensus disorder prediction | 1 | 83 | - | - | |
Cre05g0883 | 420 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0883 | 420 | MobiDBLite | consensus disorder prediction | 17 | 45 | - | - | |
Cre05g0883 | 420 | FunFam | probable transcription factor PosF21 | 230 | 283 | - | - | |
Cre05g0883 | 420 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0883 | 420 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0883 | 420 | Coils | Coil | 247 | 316 | - | - | |
Cre05g0883 | 420 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 397 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre05g0883 | 420 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0883 | Cre-Chr5:7947826 | Cre07g0896 | Cre-Chr7:7970892 | 4.20E-50 | dispersed | |
Cre05g0883 | Cre-Chr5:7947826 | Cre05g0886 | Cre-Chr5:7986999 | 4.10E-122 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53653 | PF00170 | bZIP_1 | 1.80E-08 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0883 | - | - | - | 0.0 |