Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0883 ATGGAGAAGGACAAACCCCAAGGCTATTCTGGTGGATTTCCGCCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAAGTTCATCTTCAATGTTGCTTCCTCCGATGCCTTCGGGTGCTCTTTCTGATTCAGGTCAATTTGGTCGTGAAAGGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCAAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATCCTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCTTCGACTGCCACCTCCGCAATACAAGTTGGCGAGTCATCTTCTGCTGTTGGAGATGCAATATCAACTCCTACTCCAACAATTGGAGCAGCAACCTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTCGCTGAGCTTGCGCTTATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCGGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTTCTGCTGAGAACAATGAATTAAAGCTGCGGTTGCAGACAATGGAGCAGCAAGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGGCCAACCATTTTACCCAAATAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCCCAGCAGCAGCAGCAGCAGCAACAACAACAACATTACCAGTACCATCAGCTGCATCAGCTTCATCAACAGCCAACTGGAGACAACAAATCGAAAGGATCGACTTCTTCTCCGAGTCCAAAAGACAACACATCAGATACGTCCTCTCCCACTTGTTGA 1263 45.53 MEKDKPQGYSGGFPPPSSRYSGLSPTGSIFNGKSEASSSSMLLPPMPSGALSDSGQFGRERPTDSNRFSHDISQMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGDAISTPTPTIGAATSKDDTAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHYQYHQLHQLHQQPTGDNKSKGSTSSPSPKDNTSDTSSPTC 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7947826 7951908 - CrPI670011_05g008830.1 Cre05g0883 497396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0883 420 MobiDBLite consensus disorder prediction 389 420 - -
Cre05g0883 420 MobiDBLite consensus disorder prediction 58 76 - -
Cre05g0883 420 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0883 420 Gene3D - 230 283 - -
Cre05g0883 420 MobiDBLite consensus disorder prediction 1 83 - -
Cre05g0883 420 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0883 420 MobiDBLite consensus disorder prediction 17 45 - -
Cre05g0883 420 FunFam probable transcription factor PosF21 230 283 - -
Cre05g0883 420 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0883 420 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0883 420 Coils Coil 247 316 - -
Cre05g0883 420 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 397 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre05g0883 420 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0883 Cre-Chr5:7947826 Cre07g0896 Cre-Chr7:7970892 4.20E-50 dispersed
Cre05g0883 Cre-Chr5:7947826 Cre05g0886 Cre-Chr5:7986999 4.10E-122 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53653 PF00170 bZIP_1 1.80E-08 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0883 - - - 0.0