Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0886 | ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATCATTGGTGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCCGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGCGATACATTTCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGGAGCTTTCACAGTATCAGGTCCATCAGGACTTGGTACTGGAATGATTCAATTGGACATGCATTAG | 960 | 46.35 | MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDGAFTVSGPSGLGTGMIQLDMH | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7986999 | 7989226 | - | CrPI670011_05g008860.1 | Cre05g0886 | 497399 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0886 | 319 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 220 | 283 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0886 | 319 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 299 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre05g0886 | 319 | Coils | Coil | 238 | 293 | - | - | |
Cre05g0886 | 319 | CDD | bZIP_plant_RF2 | 223 | 272 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0886 | 319 | FunFam | probable transcription factor PosF21 | 221 | 274 | - | - | |
Cre05g0886 | 319 | Pfam | bZIP transcription factor | 222 | 270 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0886 | 319 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Cre05g0886 | 319 | MobiDBLite | consensus disorder prediction | 17 | 69 | - | - | |
Cre05g0886 | 319 | SMART | brlzneu | 218 | 282 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0886 | 319 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
Cre05g0886 | 319 | SUPERFAMILY | Leucine zipper domain | 222 | 272 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0886 | 319 | Gene3D | - | 221 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0886 | Cre-Chr5:7986999 | Cre07g0896 | Cre-Chr7:7970892 | 6.00E-41 | dispersed | |
Cre05g0883 | Cre-Chr5:7947826 | Cre05g0886 | Cre-Chr5:7986999 | 4.10E-122 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53654 | PF00170 | bZIP_1 | 4.80E-09 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0886 | - | - | - | 0.0 |