Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0886 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATCATTGGTGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGGTCCGACGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGCGATACATTTCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGGAGCTTTCACAGTATCAGGTCCATCAGGACTTGGTACTGGAATGATTCAATTGGACATGCATTAG 960 46.35 MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDGAFTVSGPSGLGTGMIQLDMH 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7986999 7989226 - CrPI670011_05g008860.1 Cre05g0886 497399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0886 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0886 319 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 299 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre05g0886 319 Coils Coil 238 293 - -
Cre05g0886 319 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0886 319 FunFam probable transcription factor PosF21 221 274 - -
Cre05g0886 319 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0886 319 MobiDBLite consensus disorder prediction 1 86 - -
Cre05g0886 319 MobiDBLite consensus disorder prediction 17 69 - -
Cre05g0886 319 SMART brlzneu 218 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0886 319 MobiDBLite consensus disorder prediction 70 86 - -
Cre05g0886 319 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0886 319 Gene3D - 221 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0886 Cre-Chr5:7986999 Cre07g0896 Cre-Chr7:7970892 6.00E-41 dispersed
Cre05g0883 Cre-Chr5:7947826 Cre05g0886 Cre-Chr5:7986999 4.10E-122 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53654 PF00170 bZIP_1 4.80E-09 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0886 - - - 0.0