Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g0907 | ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCCAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACCAAACTCTAGATTCCTCCACTAGCTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGGGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGTCGTCGTCTTCTTCAATAAAGGTGGACATTGTGGTGGCTCAGGACGGGTCCAGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACCTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGCATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAGGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTCTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGAACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATCATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACTGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCACTCCTGGACTTTAG | 1410 | 43.19 | MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNQTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGGVLGKETYKKGFPSWVSGGDRRLLQSSSSSSSSIKVDIVVAQDGSSNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYHGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFTPGL | 469 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8309567 | 8312286 | - | CrPI670011_05g009070.1 | Cre05g0907 | 497420 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g0907 | 469 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 117 | IPR035513 | - | |
| Cre05g0907 | 469 | Pfam | Pectinesterase | 157 | 454 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cre05g0907 | 469 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 3 | 116 | IPR035513 | - | |
| Cre05g0907 | 469 | SMART | PMEI_2 | 1 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cre05g0907 | 469 | NCBIfam | pectinesterase inhibitor domain | 3 | 116 | IPR006501 | GO:0004857(InterPro) | |
| Cre05g0907 | 469 | Gene3D | - | 150 | 469 | IPR012334 | - | |
| Cre05g0907 | 469 | SUPERFAMILY | Pectin lyase-like | 153 | 468 | IPR011050 | - | |
| Cre05g0907 | 469 | Pfam | Plant invertase/pectin methylesterase inhibitor | 4 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cre05g0907 | 469 | CDD | PMEI-like_3 | 3 | 117 | - | - | |
| Cre05g0907 | 469 | ProSitePatterns | Pectinesterase signature 2. | 302 | 311 | IPR033131 | - | |
| Cre05g0907 | 469 | PANTHER | PECTINESTERASE | 4 | 460 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cre05g0907 | 469 | FunFam | Pectinesterase | 151 | 469 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0400 | Cre-Chr2:1160634 | Cre05g0907 | Cre-Chr5:8309567 | 4.30E-76 | dispersed | |
| Cre02g0401 | Cre-Chr2:1166126 | Cre05g0907 | Cre-Chr5:8309567 | 5.30E-83 | dispersed | |
| Cre05g0907 | Cre-Chr5:8309567 | Cre09g2047 | Cre-Chr9:39579314 | 2.20E-193 | dispersed | |
| Cre05g0907 | Cre-Chr5:8309567 | Cre05g0910 | Cre-Chr5:8339071 | 7.10E-06 | proximal | |
| Cre10g0810 | Cre-Chr10:8413219 | Cre05g0907 | Cre-Chr5:8309567 | 3.60E-154 | transposed | |
| Cre05g0324 | Cre-Chr5:2987241 | Cre05g0907 | Cre-Chr5:8309567 | 7.30E-107 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g0907 | K01051 | - | csv:101211449 | 853.588 |