Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0923 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGTTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTGAAGTGACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCAGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGGAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACCGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAACATAATCCGCCGTCCCCTAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTATGATAGGTGCCCTAGAGTCCATTAG 1062 48.12 MEEKETGVSRFTVTNDEALDSFQLAPRTEALKSTGESEVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTVTGEEMKIMYPGGNKPILTTPSYQEQHNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNYDRCPRVH 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8458372 8462443 - CrPI670011_05g009230.1 Cre05g0923 497436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0923 353 CDD DUF296 144 258 IPR005175 -
Cre05g0923 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 309 IPR039605 GO:0003680(InterPro)
Cre05g0923 353 MobiDBLite consensus disorder prediction 262 281 - -
Cre05g0923 353 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Cre05g0923 353 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Cre05g0923 353 MobiDBLite consensus disorder prediction 31 86 - -
Cre05g0923 353 MobiDBLite consensus disorder prediction 302 353 - -
Cre05g0923 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Cre05g0923 353 Gene3D - 145 275 - -
Cre05g0923 353 MobiDBLite consensus disorder prediction 297 353 - -
Cre05g0923 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0923 Cre-Chr5:8458372 Cre09g2014 Cre-Chr9:39222712 1.20E-90 dispersed
Cre05g0305 Cre-Chr5:2836686 Cre05g0923 Cre-Chr5:8458372 8.40E-73 wgd
Cre05g0923 Cre-Chr5:8458372 Cre06g0808 Cre-Chr6:1427099 2.20E-20 wgd
Cre05g0923 Cre-Chr5:8458372 Cre09g2170 Cre-Chr9:40734516 1.40E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0923 - - - 0.0