Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0947 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAGCTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCATTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAAGAGGGTAGGGCCATGATAGAAGCTGGGAATAATGACTTAATCCCAGATTGGCTACTTTGA 699 42.63 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEEGRAMIEAGNNDLIPDWLL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8669605 8678189 - CrPI670011_05g009470.1 Cre05g0947 497460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0947 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 Coils Coil 119 139 - -
Cre05g0947 232 Coils Coil 151 171 - -
Cre05g0947 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cre05g0947 232 MobiDBLite consensus disorder prediction 169 190 - -
Cre05g0947 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g0947 232 Gene3D - 13 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre05g0947 232 MobiDBLite consensus disorder prediction 169 224 - -
Cre05g0947 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0947 232 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0947 232 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0947 232 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0947 Cre-Chr5:8669605 Cre07g1953 Cre-Chr7:34944622 3.60E-43 dispersed
Cre05g0947 Cre-Chr5:8669605 Cre05g0953 Cre-Chr5:8784216 1.20E-30 proximal
Cre05g0279 Cre-Chr5:2591421 Cre05g0947 Cre-Chr5:8669605 1.30E-28 wgd
Cre05g0947 Cre-Chr5:8669605 Cre06g0798 Cre-Chr6:1338450 4.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53658 PF01486 K-box 9.00E-24 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0947 K09264 - csv:101212022 371.703