Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0953 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGATAGACAACTCCAATTGCAGCAATTAAGACTTGAAGCTGAAAGCATTAATAAGAAGATGGAGCTGTTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGCCGCAGCTCACGATTGGGCCGCCACGCACGGCTGCCGGAGGAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.43 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQLRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKAAAHDWAATHGCRRSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8784216 8792643 - CrPI670011_05g009530.1 Cre05g0953 497466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0953 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cre05g0953 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0953 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre05g0953 197 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 Coils Coil 88 108 - -
Cre05g0953 197 Coils Coil 144 171 - -
Cre05g0953 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre05g0953 197 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre05g0953 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0953 Cre-Chr5:8784216 Cre06g0799 Cre-Chr6:1345125 3.30E-45 dispersed
Cre05g0947 Cre-Chr5:8669605 Cre05g0953 Cre-Chr5:8784216 1.20E-30 proximal
Cre09g1993 Cre-Chr9:38924767 Cre05g0953 Cre-Chr5:8784216 8.60E-52 transposed
Cre05g0953 Cre-Chr5:8784216 Cre09g2199 Cre-Chr9:41090544 6.60E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53659 PF01486 K-box 3.20E-21 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0953 - - - 0.0