Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0963 ATGGACTCCTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGATATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGGTCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCCACCATCGCGCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGATGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCAGGAAAACGTGTATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.36 MDSFSTFYEDYFSSSESSNSRRPIFSDEDIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVATIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTQENVYYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8865376 8866011 - CrPI670011_05g009630.1 Cre05g0963 497476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0963 211 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cre05g0963 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 211 IPR045277 GO:0003700(InterPro)
Cre05g0963 211 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 CDD AP2 54 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cre05g0963 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0963 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0963 Cre-Chr5:8865376 Cre10g2039 Cre-Chr10:35103610 6.80E-33 dispersed
Cre05g0963 Cre-Chr5:8865376 Cre05g0964 Cre-Chr5:8878733 2.40E-25 tandem
Cre09g1965 Cre-Chr9:38577931 Cre05g0963 Cre-Chr5:8865376 4.30E-64 transposed
Cre05g0963 Cre-Chr5:8865376 Cre09g2209 Cre-Chr9:41243439 2.70E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53661 PF00847 AP2 1.10E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0963 - - - 0.0