Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g0964 | ATGTCTGATAATAATAATAACAATTCTCCCGCCCGCCCTGGTCGCCACCCCTTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCGTCCCTTAATTTCCCCGACTCTCTTAATTCCTATCACATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA | 582 | 55.33 | MSDNNNNNSPARPGRHPFFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSLNSYHIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8878733 | 8879314 | - | CrPI670011_05g009640.1 | Cre05g0964 | 497477 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g0964 | 193 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cre05g0964 | 193 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 13 | 191 | IPR045277 | GO:0003700(InterPro) | |
Cre05g0964 | 193 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | PRINTS | Ethylene responsive element binding protein signature | 56 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | Pfam | AP2 domain | 20 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | SUPERFAMILY | DNA-binding domain | 19 | 76 | IPR016177 | GO:0003677(InterPro) | |
Cre05g0964 | 193 | MobiDBLite | consensus disorder prediction | 105 | 138 | - | - | |
Cre05g0964 | 193 | SMART | rav1_2 | 18 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | MobiDBLite | consensus disorder prediction | 159 | 193 | - | - | |
Cre05g0964 | 193 | CDD | AP2 | 19 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 17 | 75 | - | - | |
Cre05g0964 | 193 | Gene3D | AP2/ERF domain | 19 | 75 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre05g0964 | 193 | MobiDBLite | consensus disorder prediction | 170 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0964 | Cre-Chr5:8878733 | Cre10g0616 | Cre-Chr10:5707220 | 3.90E-43 | dispersed | |
Cre05g0963 | Cre-Chr5:8865376 | Cre05g0964 | Cre-Chr5:8878733 | 2.40E-25 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53662 | PF00847 | AP2 | 3.00E-10 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g0964 | - | - | - | 0.0 |