Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0964 ATGTCTGATAATAATAATAACAATTCTCCCGCCCGCCCTGGTCGCCACCCCTTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCGTCCCTTAATTTCCCCGACTCTCTTAATTCCTATCACATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATTCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 582 55.33 MSDNNNNNSPARPGRHPFFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSLNSYHIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADSSGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8878733 8879314 - CrPI670011_05g009640.1 Cre05g0964 497477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0964 193 MobiDBLite consensus disorder prediction 1 21 - -
Cre05g0964 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 191 IPR045277 GO:0003700(InterPro)
Cre05g0964 193 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 Pfam AP2 domain 20 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677(InterPro)
Cre05g0964 193 MobiDBLite consensus disorder prediction 105 138 - -
Cre05g0964 193 SMART rav1_2 18 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 MobiDBLite consensus disorder prediction 159 193 - -
Cre05g0964 193 CDD AP2 19 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cre05g0964 193 Gene3D AP2/ERF domain 19 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g0964 193 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0964 Cre-Chr5:8878733 Cre10g0616 Cre-Chr10:5707220 3.90E-43 dispersed
Cre05g0963 Cre-Chr5:8865376 Cre05g0964 Cre-Chr5:8878733 2.40E-25 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53662 PF00847 AP2 3.00E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0964 - - - 0.0