Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0978 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTATTCGATTCCCAGTTCAATGCCCAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACCGGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCCAACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGGTTGTGCCCTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGCCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTCTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTCGGTTGCAGGAGGCTCGCTTCGGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCAGTTAATTAGTTCGGGCAGCGGCTTCGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGTGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGGAAGAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACTGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATATATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGATACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGCTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTCGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACGGCCAAACTCACCGTTGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2346 45.01 MPSGAITDQSFLAYSIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTGIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVVPFANHGSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPLMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFFGCRRLASGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGLDNRVSLLRANPMNANESTMFILQETWTDISGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYACTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9008584 9013107 + CrPI670011_05g009780.1 Cre05g0978 497491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0978 781 MobiDBLite consensus disorder prediction 57 94 - -
Cre05g0978 781 Coils Coil 138 170 - -
Cre05g0978 781 Gene3D - 73 160 - -
Cre05g0978 781 SUPERFAMILY Bet v1-like 542 775 - -
Cre05g0978 781 CDD START_ArGLABRA2_like 294 512 - -
Cre05g0978 781 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cre05g0978 781 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Cre05g0978 781 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Cre05g0978 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 779 IPR042160 -
Cre05g0978 781 Pfam START domain 295 513 IPR002913 GO:0008289(InterPro)
Cre05g0978 781 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Cre05g0978 781 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre05g0978 781 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Cre05g0978 781 FunFam Homeobox-leucine zipper protein GLABRA 2 294 513 - -
Cre05g0978 781 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Cre05g0978 781 SMART START_1 294 514 IPR002913 GO:0008289(InterPro)
Cre05g0978 781 SUPERFAMILY Bet v1-like 286 514 - -
Cre05g0978 781 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0978 Cre-Chr5:9008584 Cre09g1114 Cre-Chr9:11791150 7.40E-149 dispersed
Cre05g0260 Cre-Chr5:2446888 Cre05g0978 Cre-Chr5:9008584 8.20E-214 wgd
Cre05g0978 Cre-Chr5:9008584 Cre06g0780 Cre-Chr6:1186091 8.10E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53665 PF01852 START 1.40E-47 CL0209 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0978 K09338 - csv:101218216 1463.74